Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0106 and Dsui_0107 are separated by 149 nucleotides Dsui_0107 and Dsui_0108 are separated by 296 nucleotides Dsui_0108 and Dsui_0109 are separated by 135 nucleotides
Dsui_0106: Dsui_0106 - hypothetical protein, at 104,714 to 105,490
_0106
Dsui_0107: Dsui_0107 - PDZ domain-containing protein, at 105,640 to 106,716
_0107
Dsui_0108: Dsui_0108 - hypothetical protein, at 107,013 to 107,132
_0108
Dsui_0109: Dsui_0109 - response regulator of the LytR/AlgR family, at 107,268 to 108,053
_0109
Position (kb)
105
106
107 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 104.696 kb on + strand at 104.715 kb on - strand at 104.715 kb on - strand at 104.744 kb on - strand at 104.955 kb on - strand, within Dsui_0106 at 104.965 kb on + strand, within Dsui_0106 at 104.984 kb on + strand at 104.997 kb on - strand, within Dsui_0106 at 105.068 kb on + strand, within Dsui_0106 at 105.076 kb on + strand at 105.113 kb on - strand, within Dsui_0106 at 105.202 kb on + strand, within Dsui_0106 at 105.210 kb on - strand at 105.210 kb on - strand, within Dsui_0106 at 105.275 kb on - strand, within Dsui_0106 at 105.458 kb on - strand at 105.467 kb on + strand at 105.564 kb on - strand at 105.712 kb on + strand at 105.713 kb on - strand at 105.720 kb on - strand at 105.720 kb on - strand at 105.771 kb on - strand at 105.830 kb on + strand, within Dsui_0107 at 105.830 kb on + strand at 105.832 kb on + strand, within Dsui_0107 at 105.832 kb on + strand, within Dsui_0107 at 105.838 kb on - strand at 105.838 kb on - strand at 105.861 kb on + strand, within Dsui_0107 at 105.863 kb on + strand, within Dsui_0107 at 105.889 kb on + strand, within Dsui_0107 at 105.942 kb on + strand, within Dsui_0107 at 105.942 kb on - strand at 105.944 kb on + strand at 105.949 kb on + strand, within Dsui_0107 at 105.949 kb on - strand, within Dsui_0107 at 106.032 kb on - strand, within Dsui_0107 at 106.059 kb on + strand, within Dsui_0107 at 106.073 kb on + strand at 106.096 kb on - strand at 106.126 kb on - strand, within Dsui_0107 at 106.129 kb on + strand, within Dsui_0107 at 106.161 kb on + strand, within Dsui_0107 at 106.169 kb on - strand, within Dsui_0107 at 106.169 kb on - strand, within Dsui_0107 at 106.172 kb on + strand, within Dsui_0107 at 106.274 kb on + strand at 106.294 kb on - strand at 106.294 kb on - strand, within Dsui_0107 at 106.327 kb on - strand at 106.332 kb on - strand at 106.351 kb on + strand at 106.352 kb on + strand, within Dsui_0107 at 106.354 kb on + strand, within Dsui_0107 at 106.357 kb on - strand, within Dsui_0107 at 106.357 kb on - strand at 106.397 kb on + strand, within Dsui_0107 at 106.397 kb on + strand, within Dsui_0107 at 106.397 kb on + strand at 106.405 kb on - strand, within Dsui_0107 at 106.405 kb on - strand, within Dsui_0107 at 106.410 kb on - strand, within Dsui_0107 at 106.452 kb on - strand at 106.492 kb on + strand, within Dsui_0107 at 106.500 kb on - strand, within Dsui_0107 at 106.502 kb on + strand, within Dsui_0107 at 106.502 kb on + strand, within Dsui_0107 at 106.536 kb on + strand at 106.544 kb on - strand, within Dsui_0107 at 106.570 kb on - strand, within Dsui_0107 at 106.572 kb on + strand at 106.653 kb on + strand at 106.655 kb on - strand at 106.660 kb on - strand at 106.735 kb on - strand at 106.758 kb on + strand at 106.758 kb on - strand at 106.786 kb on - strand at 106.787 kb on + strand at 106.795 kb on - strand at 106.795 kb on - strand at 106.814 kb on - strand at 106.833 kb on + strand at 106.868 kb on - strand at 106.868 kb on - strand at 106.890 kb on - strand at 106.912 kb on + strand at 106.915 kb on - strand at 106.923 kb on + strand at 106.925 kb on - strand at 106.962 kb on + strand at 106.962 kb on + strand at 106.965 kb on - strand at 106.970 kb on - strand at 106.974 kb on + strand at 106.974 kb on + strand at 107.012 kb on - strand at 107.068 kb on - strand at 107.096 kb on + strand, within Dsui_0108 at 107.146 kb on + strand at 107.146 kb on + strand at 107.154 kb on - strand at 107.154 kb on - strand at 107.159 kb on + strand at 107.177 kb on + strand at 107.177 kb on + strand at 107.194 kb on - strand at 107.256 kb on + strand at 107.264 kb on - strand at 107.332 kb on + strand at 107.332 kb on + strand at 107.340 kb on - strand at 107.340 kb on - strand at 107.342 kb on + strand at 107.395 kb on - strand, within Dsui_0109 at 107.433 kb on - strand, within Dsui_0109 at 107.472 kb on + strand, within Dsui_0109 at 107.504 kb on + strand at 107.581 kb on - strand at 107.648 kb on - strand, within Dsui_0109 at 107.648 kb on - strand, within Dsui_0109 at 107.658 kb on + strand, within Dsui_0109 at 107.700 kb on - strand, within Dsui_0109 at 107.703 kb on + strand, within Dsui_0109
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 104,696 + +0.5 104,715 - +0.7 104,715 - -0.5 104,744 - -2.3 104,955 - Dsui_0106 0.31 -0.5 104,965 + Dsui_0106 0.32 -1.1 104,984 + -0.5 104,997 - Dsui_0106 0.36 -2.7 105,068 + Dsui_0106 0.46 -0.5 105,076 + +0.5 105,113 - Dsui_0106 0.51 +0.5 105,202 + Dsui_0106 0.63 -1.1 105,210 - +0.5 105,210 - Dsui_0106 0.64 -0.6 105,275 - Dsui_0106 0.72 -0.5 105,458 - -3.1 105,467 + -2.1 105,564 - +0.5 105,712 + +0.5 105,713 - -0.5 105,720 - +0.5 105,720 - -0.5 105,771 - -0.5 105,830 + Dsui_0107 0.18 -1.8 105,830 + +0.5 105,832 + Dsui_0107 0.18 -0.5 105,832 + Dsui_0107 0.18 -0.5 105,838 - +0.5 105,838 - -0.5 105,861 + Dsui_0107 0.21 +0.5 105,863 + Dsui_0107 0.21 +0.5 105,889 + Dsui_0107 0.23 -2.1 105,942 + Dsui_0107 0.28 -1.1 105,942 - +0.5 105,944 + +0.5 105,949 + Dsui_0107 0.29 -1.5 105,949 - Dsui_0107 0.29 -1.5 106,032 - Dsui_0107 0.36 -1.8 106,059 + Dsui_0107 0.39 +0.5 106,073 + +0.5 106,096 - -0.5 106,126 - Dsui_0107 0.45 -1.5 106,129 + Dsui_0107 0.45 +0.5 106,161 + Dsui_0107 0.48 +0.5 106,169 - Dsui_0107 0.49 -0.5 106,169 - Dsui_0107 0.49 +0.5 106,172 + Dsui_0107 0.49 -1.5 106,274 + +0.5 106,294 - -2.3 106,294 - Dsui_0107 0.61 -0.5 106,327 - +0.5 106,332 - +0.5 106,351 + +0.5 106,352 + Dsui_0107 0.66 +0.5 106,354 + Dsui_0107 0.66 -1.8 106,357 - Dsui_0107 0.67 -2.8 106,357 - +0.5 106,397 + Dsui_0107 0.70 -1.1 106,397 + Dsui_0107 0.70 -2.8 106,397 + +0.5 106,405 - Dsui_0107 0.71 -0.5 106,405 - Dsui_0107 0.71 +0.5 106,410 - Dsui_0107 0.71 -2.5 106,452 - +0.5 106,492 + Dsui_0107 0.79 -1.1 106,500 - Dsui_0107 0.80 -1.5 106,502 + Dsui_0107 0.80 +0.5 106,502 + Dsui_0107 0.80 -0.5 106,536 + +0.5 106,544 - Dsui_0107 0.84 -1.5 106,570 - Dsui_0107 0.86 -1.1 106,572 + +0.5 106,653 + +0.5 106,655 - -1.8 106,660 - +0.5 106,735 - -0.5 106,758 + +0.5 106,758 - -0.5 106,786 - +0.5 106,787 + -1.1 106,795 - -1.5 106,795 - +0.5 106,814 - -0.5 106,833 + -0.5 106,868 - +0.5 106,868 - +0.5 106,890 - -0.5 106,912 + +0.5 106,915 - -1.5 106,923 + -0.5 106,925 - -0.5 106,962 + -1.1 106,962 + +0.5 106,965 - -1.1 106,970 - -0.5 106,974 + -0.5 106,974 + +0.5 107,012 - -1.5 107,068 - +0.5 107,096 + Dsui_0108 0.69 -1.1 107,146 + +0.5 107,146 + -1.8 107,154 - -1.1 107,154 - +0.5 107,159 + -1.5 107,177 + -0.5 107,177 + -1.5 107,194 - -1.5 107,256 + -1.1 107,264 - +0.5 107,332 + +0.5 107,332 + +0.5 107,340 - -1.1 107,340 - +0.5 107,342 + -0.5 107,395 - Dsui_0109 0.16 -1.1 107,433 - Dsui_0109 0.21 +0.5 107,472 + Dsui_0109 0.26 -2.5 107,504 + +0.5 107,581 - +0.5 107,648 - Dsui_0109 0.48 -1.1 107,648 - Dsui_0109 0.48 -1.1 107,658 + Dsui_0109 0.50 +0.5 107,700 - Dsui_0109 0.55 -0.5 107,703 + Dsui_0109 0.55 +0.5
Or see this region's nucleotide sequence