Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0034 and Dsui_0035 are separated by 267 nucleotides Dsui_0035 and Dsui_0036 are separated by 115 nucleotides Dsui_0036 and Dsui_0037 are separated by 86 nucleotides
Dsui_0034: Dsui_0034 - flagellar capping protein, at 30,101 to 31,537
_0034
Dsui_0035: Dsui_0035 - ankyrin repeat-containing protein, at 31,805 to 32,854
_0035
Dsui_0036: Dsui_0036 - TonB family protein, at 32,970 to 33,542
_0036
Dsui_0037: Dsui_0037 - putative acyl-CoA transferase/carnitine dehydratase, at 33,629 to 34,840
_0037
Position (kb)
31
32
33 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 30.808 kb on - strand, within Dsui_0034 at 30.947 kb on + strand, within Dsui_0034 at 30.968 kb on + strand, within Dsui_0034 at 31.022 kb on - strand, within Dsui_0034 at 31.104 kb on - strand, within Dsui_0034 at 31.157 kb on + strand, within Dsui_0034 at 31.215 kb on - strand, within Dsui_0034 at 31.328 kb on + strand at 31.391 kb on + strand at 31.399 kb on - strand at 31.417 kb on + strand at 31.484 kb on - strand at 31.549 kb on + strand at 31.569 kb on + strand at 31.604 kb on - strand at 31.622 kb on + strand at 31.630 kb on - strand at 31.827 kb on + strand at 31.835 kb on - strand at 31.883 kb on - strand at 32.118 kb on - strand, within Dsui_0035 at 32.129 kb on - strand, within Dsui_0035 at 32.187 kb on - strand, within Dsui_0035 at 32.206 kb on + strand, within Dsui_0035 at 32.207 kb on + strand at 32.210 kb on - strand, within Dsui_0035 at 32.210 kb on - strand, within Dsui_0035 at 32.215 kb on - strand at 32.215 kb on - strand, within Dsui_0035 at 32.215 kb on - strand, within Dsui_0035 at 32.230 kb on - strand, within Dsui_0035 at 32.280 kb on - strand, within Dsui_0035 at 32.282 kb on + strand, within Dsui_0035 at 32.332 kb on - strand, within Dsui_0035 at 32.433 kb on + strand at 32.477 kb on + strand at 32.486 kb on + strand, within Dsui_0035 at 32.618 kb on - strand, within Dsui_0035 at 32.660 kb on + strand at 32.671 kb on + strand at 32.671 kb on + strand at 32.758 kb on - strand at 32.834 kb on - strand at 33.188 kb on + strand, within Dsui_0036 at 33.188 kb on + strand, within Dsui_0036 at 33.261 kb on - strand, within Dsui_0036 at 33.273 kb on - strand, within Dsui_0036 at 33.332 kb on + strand, within Dsui_0036 at 33.353 kb on - strand, within Dsui_0036 at 33.551 kb on + strand at 33.559 kb on - strand at 33.671 kb on + strand at 33.715 kb on + strand at 33.786 kb on - strand, within Dsui_0037 at 33.851 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 30,808 - Dsui_0034 0.49 -0.5 30,947 + Dsui_0034 0.59 -0.5 30,968 + Dsui_0034 0.60 -0.5 31,022 - Dsui_0034 0.64 +0.5 31,104 - Dsui_0034 0.70 -0.5 31,157 + Dsui_0034 0.73 -0.1 31,215 - Dsui_0034 0.78 +0.5 31,328 + +0.5 31,391 + +0.5 31,399 - +0.5 31,417 + +0.3 31,484 - -1.5 31,549 + +0.5 31,569 + -0.5 31,604 - +0.5 31,622 + -0.5 31,630 - +0.5 31,827 + +0.5 31,835 - -0.1 31,883 - -3.5 32,118 - Dsui_0035 0.30 -1.5 32,129 - Dsui_0035 0.31 -0.5 32,187 - Dsui_0035 0.36 -1.1 32,206 + Dsui_0035 0.38 -1.1 32,207 + +0.5 32,210 - Dsui_0035 0.39 -2.3 32,210 - Dsui_0035 0.39 -1.1 32,215 - -2.1 32,215 - Dsui_0035 0.39 -2.9 32,215 - Dsui_0035 0.39 +1.4 32,230 - Dsui_0035 0.40 -2.8 32,280 - Dsui_0035 0.45 -2.7 32,282 + Dsui_0035 0.45 -2.1 32,332 - Dsui_0035 0.50 -0.9 32,433 + +0.5 32,477 + +0.5 32,486 + Dsui_0035 0.65 -0.5 32,618 - Dsui_0035 0.77 -1.8 32,660 + -1.5 32,671 + +0.5 32,671 + -1.5 32,758 - +2.8 32,834 - -2.8 33,188 + Dsui_0036 0.38 -1.0 33,188 + Dsui_0036 0.38 -0.5 33,261 - Dsui_0036 0.51 -1.1 33,273 - Dsui_0036 0.53 -1.1 33,332 + Dsui_0036 0.63 -1.1 33,353 - Dsui_0036 0.67 -2.5 33,551 + +0.5 33,559 - -0.4 33,671 + -0.5 33,715 + +0.5 33,786 - Dsui_0037 0.13 -1.8 33,851 + +0.5
Or see this region's nucleotide sequence