Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0004 and Dsui_0005 are separated by 32 nucleotides Dsui_0005 and Dsui_0006 are separated by 9 nucleotides Dsui_0006 and Dsui_0007 are separated by 85 nucleotides Dsui_0007 and Dsui_0008 are separated by 312 nucleotides Dsui_0008 and Dsui_0009 are separated by 0 nucleotides
Dsui_0004: Dsui_0004 - molybdenum cofactor biosynthesis protein MoaC, at 3,829 to 4,323
_0004
Dsui_0005: Dsui_0005 - putative secreted protein, at 4,356 to 4,826
_0005
Dsui_0006: Dsui_0006 - sulfur oxidation protein SoxZ, at 4,836 to 5,153
_0006
Dsui_0007: Dsui_0007 - cold shock protein, at 5,239 to 5,442
_0007
Dsui_0008: Dsui_0008 - hypothetical protein, at 5,755 to 6,072
_0008
Dsui_0009: Dsui_0009 - ATP-dependent Clp protease ATP-binding subunit clpA, at 6,073 to 8,328
_0009
Position (kb) 5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4.241 kb on - strand at 4.260 kb on + strand, within Dsui_0004 at 4.426 kb on - strand, within Dsui_0005 at 4.426 kb on - strand at 4.504 kb on - strand, within Dsui_0005 at 4.522 kb on - strand, within Dsui_0005 at 4.630 kb on + strand, within Dsui_0005 at 4.631 kb on - strand, within Dsui_0005 at 4.695 kb on + strand, within Dsui_0005 at 4.705 kb on + strand, within Dsui_0005 at 4.705 kb on + strand, within Dsui_0005 at 4.705 kb on + strand, within Dsui_0005 at 4.705 kb on + strand, within Dsui_0005 at 4.713 kb on - strand, within Dsui_0005 at 4.725 kb on - strand, within Dsui_0005 at 4.742 kb on + strand, within Dsui_0005 at 4.750 kb on - strand, within Dsui_0005 at 4.750 kb on - strand, within Dsui_0005 at 4.750 kb on - strand, within Dsui_0005 at 4.750 kb on - strand, within Dsui_0005 at 4.762 kb on - strand at 4.861 kb on + strand at 4.887 kb on + strand, within Dsui_0006 at 4.893 kb on - strand, within Dsui_0006 at 4.910 kb on + strand, within Dsui_0006 at 5.002 kb on + strand, within Dsui_0006 at 5.002 kb on - strand, within Dsui_0006 at 5.007 kb on + strand, within Dsui_0006 at 5.007 kb on + strand, within Dsui_0006 at 5.026 kb on - strand, within Dsui_0006 at 5.077 kb on - strand at 5.123 kb on - strand at 5.123 kb on - strand at 5.164 kb on + strand at 5.172 kb on - strand at 5.172 kb on - strand at 5.172 kb on - strand at 5.173 kb on - strand at 5.237 kb on + strand at 5.237 kb on + strand at 5.237 kb on + strand at 5.244 kb on - strand at 5.244 kb on - strand at 5.244 kb on - strand at 5.297 kb on - strand, within Dsui_0007 at 5.359 kb on + strand at 5.372 kb on - strand, within Dsui_0007 at 5.396 kb on + strand, within Dsui_0007 at 5.443 kb on - strand at 5.492 kb on - strand at 5.547 kb on - strand at 5.569 kb on + strand at 5.587 kb on - strand at 5.600 kb on - strand at 5.616 kb on + strand at 5.651 kb on + strand at 5.651 kb on + strand at 5.651 kb on + strand at 5.659 kb on - strand at 5.659 kb on - strand at 5.659 kb on - strand at 5.659 kb on - strand at 5.710 kb on + strand at 5.710 kb on + strand at 5.710 kb on + strand at 5.710 kb on + strand at 5.710 kb on + strand at 5.718 kb on + strand at 5.718 kb on + strand at 5.718 kb on - strand at 5.718 kb on - strand at 5.726 kb on - strand at 5.726 kb on - strand at 5.730 kb on + strand at 5.730 kb on + strand at 5.730 kb on + strand at 5.730 kb on + strand at 5.738 kb on - strand at 5.740 kb on + strand at 5.748 kb on - strand at 5.750 kb on + strand at 5.751 kb on + strand at 5.751 kb on + strand at 5.759 kb on - strand at 5.759 kb on - strand at 5.776 kb on + strand at 5.776 kb on + strand at 5.776 kb on + strand at 5.781 kb on + strand at 5.784 kb on - strand at 5.786 kb on + strand at 5.786 kb on + strand at 5.786 kb on + strand at 5.786 kb on + strand at 5.786 kb on + strand at 5.786 kb on + strand at 5.794 kb on - strand at 5.794 kb on - strand, within Dsui_0008 at 5.807 kb on + strand, within Dsui_0008 at 5.807 kb on + strand, within Dsui_0008 at 5.814 kb on + strand, within Dsui_0008 at 5.815 kb on - strand, within Dsui_0008 at 5.827 kb on - strand, within Dsui_0008 at 5.831 kb on + strand, within Dsui_0008 at 5.839 kb on - strand, within Dsui_0008 at 5.866 kb on + strand, within Dsui_0008 at 5.866 kb on + strand, within Dsui_0008 at 5.874 kb on - strand, within Dsui_0008 at 5.936 kb on + strand, within Dsui_0008 at 5.972 kb on + strand, within Dsui_0008 at 5.974 kb on + strand, within Dsui_0008 at 5.975 kb on - strand, within Dsui_0008 at 5.975 kb on - strand, within Dsui_0008 at 5.980 kb on - strand, within Dsui_0008 at 5.985 kb on + strand, within Dsui_0008 at 5.996 kb on + strand, within Dsui_0008 at 5.996 kb on + strand, within Dsui_0008 at 5.996 kb on + strand, within Dsui_0008 at 5.996 kb on + strand, within Dsui_0008 at 6.002 kb on + strand, within Dsui_0008 at 6.007 kb on + strand, within Dsui_0008 at 6.043 kb on + strand at 6.053 kb on + strand at 6.269 kb on + strand at 6.277 kb on - strand at 6.277 kb on - strand at 6.318 kb on - strand at 6.422 kb on + strand, within Dsui_0009
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 4,241 - +0.5 4,260 + Dsui_0004 0.87 -0.4 4,426 - Dsui_0005 0.15 +0.5 4,426 - +0.5 4,504 - Dsui_0005 0.31 -0.5 4,522 - Dsui_0005 0.35 +0.5 4,630 + Dsui_0005 0.58 +0.0 4,631 - Dsui_0005 0.58 -0.5 4,695 + Dsui_0005 0.72 +0.7 4,705 + Dsui_0005 0.74 -0.5 4,705 + Dsui_0005 0.74 -0.6 4,705 + Dsui_0005 0.74 -0.7 4,705 + Dsui_0005 0.74 +0.1 4,713 - Dsui_0005 0.76 -0.5 4,725 - Dsui_0005 0.78 -0.5 4,742 + Dsui_0005 0.82 -0.2 4,750 - Dsui_0005 0.84 -1.1 4,750 - Dsui_0005 0.84 +0.5 4,750 - Dsui_0005 0.84 +0.5 4,750 - Dsui_0005 0.84 -1.5 4,762 - +0.5 4,861 + -0.2 4,887 + Dsui_0006 0.16 -0.3 4,893 - Dsui_0006 0.18 -1.8 4,910 + Dsui_0006 0.23 +0.3 5,002 + Dsui_0006 0.52 -0.3 5,002 - Dsui_0006 0.52 -1.8 5,007 + Dsui_0006 0.54 -0.5 5,007 + Dsui_0006 0.54 -0.7 5,026 - Dsui_0006 0.60 +0.5 5,077 - +0.5 5,123 - -1.1 5,123 - +0.5 5,164 + -0.2 5,172 - +0.5 5,172 - -1.5 5,172 - -0.5 5,173 - -1.5 5,237 + -0.5 5,237 + +0.5 5,237 + +0.5 5,244 - -0.1 5,244 - -0.7 5,244 - -1.2 5,297 - Dsui_0007 0.28 -2.5 5,359 + +0.5 5,372 - Dsui_0007 0.65 -1.6 5,396 + Dsui_0007 0.77 +0.5 5,443 - -1.8 5,492 - -0.7 5,547 - -1.1 5,569 + +0.5 5,587 - -0.8 5,600 - -0.5 5,616 + +0.5 5,651 + +0.5 5,651 + +0.5 5,651 + -1.8 5,659 - -1.1 5,659 - -0.5 5,659 - -2.8 5,659 - +0.5 5,710 + +0.5 5,710 + -1.1 5,710 + +0.5 5,710 + -1.8 5,710 + +0.5 5,718 + -0.5 5,718 + +0.5 5,718 - -0.5 5,718 - -1.5 5,726 - +0.5 5,726 - +0.5 5,730 + -0.5 5,730 + +0.5 5,730 + +0.5 5,730 + -1.5 5,738 - -0.5 5,740 + -0.3 5,748 - +0.5 5,750 + -0.4 5,751 + -0.3 5,751 + +0.1 5,759 - -0.5 5,759 - +0.5 5,776 + -0.1 5,776 + -0.8 5,776 + -0.8 5,781 + -0.0 5,784 - -2.3 5,786 + -0.6 5,786 + -0.3 5,786 + +0.4 5,786 + -0.3 5,786 + -0.2 5,786 + +0.5 5,794 - +0.5 5,794 - Dsui_0008 0.12 +0.5 5,807 + Dsui_0008 0.16 -0.4 5,807 + Dsui_0008 0.16 -0.2 5,814 + Dsui_0008 0.19 +0.2 5,815 - Dsui_0008 0.19 -0.3 5,827 - Dsui_0008 0.23 +0.5 5,831 + Dsui_0008 0.24 -0.7 5,839 - Dsui_0008 0.26 +0.5 5,866 + Dsui_0008 0.35 -0.2 5,866 + Dsui_0008 0.35 -0.4 5,874 - Dsui_0008 0.37 -2.7 5,936 + Dsui_0008 0.57 -0.3 5,972 + Dsui_0008 0.68 -0.3 5,974 + Dsui_0008 0.69 -0.2 5,975 - Dsui_0008 0.69 +0.5 5,975 - Dsui_0008 0.69 +0.5 5,980 - Dsui_0008 0.71 +0.5 5,985 + Dsui_0008 0.72 -0.3 5,996 + Dsui_0008 0.76 -0.5 5,996 + Dsui_0008 0.76 -0.0 5,996 + Dsui_0008 0.76 +0.0 5,996 + Dsui_0008 0.76 -0.3 6,002 + Dsui_0008 0.78 -0.3 6,007 + Dsui_0008 0.79 -0.3 6,043 + -0.2 6,053 + -0.6 6,269 + -1.8 6,277 - -3.4 6,277 - +0.5 6,318 - +0.5 6,422 + Dsui_0009 0.15 -2.6
Or see this region's nucleotide sequence