Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19475

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19465 and BWI76_RS19470 are separated by 53 nucleotidesBWI76_RS19470 and BWI76_RS19475 overlap by 7 nucleotidesBWI76_RS19475 and BWI76_RS19480 are separated by 210 nucleotides BWI76_RS19465: BWI76_RS19465 - hypothetical protein, at 4,068,223 to 4,068,690 _RS19465 BWI76_RS19470: BWI76_RS19470 - DNA-binding response regulator, at 4,068,744 to 4,069,463 _RS19470 BWI76_RS19475: BWI76_RS19475 - signal transduction histidine kinase, at 4,069,457 to 4,071,145 _RS19475 BWI76_RS19480: BWI76_RS19480 - transcriptional regulator, at 4,071,356 to 4,072,114 _RS19480 Position (kb) 4069 4070 4071 4072Strain fitness (log2 ratio) -2 -1 0 1at 4068.528 kb on + strand, within BWI76_RS19465at 4068.530 kb on - strand, within BWI76_RS19465at 4068.653 kb on + strandat 4069.303 kb on + strand, within BWI76_RS19470at 4069.528 kb on - strandat 4069.690 kb on + strand, within BWI76_RS19475at 4069.768 kb on + strand, within BWI76_RS19475at 4070.172 kb on - strand, within BWI76_RS19475at 4070.380 kb on - strand, within BWI76_RS19475at 4070.627 kb on - strand, within BWI76_RS19475at 4070.627 kb on - strand, within BWI76_RS19475at 4070.779 kb on - strand, within BWI76_RS19475at 4070.794 kb on - strand, within BWI76_RS19475at 4071.122 kb on - strandat 4071.333 kb on + strandat 4071.663 kb on + strand, within BWI76_RS19480at 4071.682 kb on + strand, within BWI76_RS19480at 4071.906 kb on - strand, within BWI76_RS19480

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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4,068,528 + BWI76_RS19465 0.65 +0.6
4,068,530 - BWI76_RS19465 0.66 -0.0
4,068,653 + -0.0
4,069,303 + BWI76_RS19470 0.78 +0.1
4,069,528 - -1.9
4,069,690 + BWI76_RS19475 0.14 -2.0
4,069,768 + BWI76_RS19475 0.18 -0.9
4,070,172 - BWI76_RS19475 0.42 -0.9
4,070,380 - BWI76_RS19475 0.55 -0.5
4,070,627 - BWI76_RS19475 0.69 -1.0
4,070,627 - BWI76_RS19475 0.69 +0.6
4,070,779 - BWI76_RS19475 0.78 -1.3
4,070,794 - BWI76_RS19475 0.79 -0.4
4,071,122 - -0.1
4,071,333 + +0.3
4,071,663 + BWI76_RS19480 0.40 +0.3
4,071,682 + BWI76_RS19480 0.43 -1.2
4,071,906 - BWI76_RS19480 0.72 +1.2

Or see this region's nucleotide sequence