Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17505

Experiment: L-Malic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS17500 and BWI76_RS17505 are separated by 62 nucleotidesBWI76_RS17505 and BWI76_RS17510 are separated by 63 nucleotides BWI76_RS17500: BWI76_RS17500 - knotted carbamoyltransferase YgeW, at 3,628,648 to 3,629,835 _RS17500 BWI76_RS17505: BWI76_RS17505 - PLP-dependent lyase/thiolase, at 3,629,898 to 3,631,097 _RS17505 BWI76_RS17510: BWI76_RS17510 - selenium metabolism hydrolase, at 3,631,161 to 3,632,372 _RS17510 Position (kb) 3629 3630 3631 3632Strain fitness (log2 ratio) -2 -1 0 1at 3629.083 kb on - strand, within BWI76_RS17500at 3629.302 kb on + strand, within BWI76_RS17500at 3629.330 kb on + strand, within BWI76_RS17500at 3629.350 kb on - strand, within BWI76_RS17500at 3629.579 kb on + strand, within BWI76_RS17500at 3629.813 kb on - strandat 3629.858 kb on + strandat 3629.868 kb on - strandat 3629.868 kb on - strandat 3630.207 kb on - strand, within BWI76_RS17505at 3630.556 kb on - strand, within BWI76_RS17505at 3630.686 kb on + strand, within BWI76_RS17505at 3630.694 kb on + strand, within BWI76_RS17505at 3630.739 kb on - strand, within BWI76_RS17505at 3630.775 kb on - strand, within BWI76_RS17505at 3630.894 kb on - strand, within BWI76_RS17505at 3630.894 kb on - strand, within BWI76_RS17505at 3631.040 kb on - strandat 3631.042 kb on + strandat 3631.146 kb on - strandat 3631.498 kb on + strand, within BWI76_RS17510at 3631.631 kb on + strand, within BWI76_RS17510at 3632.060 kb on + strand, within BWI76_RS17510at 3632.070 kb on + strand, within BWI76_RS17510at 3632.070 kb on + strand, within BWI76_RS17510at 3632.078 kb on - strand, within BWI76_RS17510

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
remove
3,629,083 - BWI76_RS17500 0.37 -1.9
3,629,302 + BWI76_RS17500 0.55 +0.5
3,629,330 + BWI76_RS17500 0.57 +0.3
3,629,350 - BWI76_RS17500 0.59 -0.2
3,629,579 + BWI76_RS17500 0.78 +1.0
3,629,813 - +0.1
3,629,858 + +0.4
3,629,868 - +0.4
3,629,868 - -0.5
3,630,207 - BWI76_RS17505 0.26 -0.1
3,630,556 - BWI76_RS17505 0.55 -0.3
3,630,686 + BWI76_RS17505 0.66 +0.1
3,630,694 + BWI76_RS17505 0.66 -0.5
3,630,739 - BWI76_RS17505 0.70 -0.3
3,630,775 - BWI76_RS17505 0.73 +0.8
3,630,894 - BWI76_RS17505 0.83 +0.3
3,630,894 - BWI76_RS17505 0.83 -0.0
3,631,040 - +0.5
3,631,042 + -0.6
3,631,146 - +0.5
3,631,498 + BWI76_RS17510 0.28 +1.3
3,631,631 + BWI76_RS17510 0.39 -0.2
3,632,060 + BWI76_RS17510 0.74 +0.4
3,632,070 + BWI76_RS17510 0.75 -0.3
3,632,070 + BWI76_RS17510 0.75 -0.1
3,632,078 - BWI76_RS17510 0.76 +1.0

Or see this region's nucleotide sequence