Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07795

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07780 and BWI76_RS07785 overlap by 4 nucleotidesBWI76_RS07785 and BWI76_RS07790 overlap by 20 nucleotidesBWI76_RS07790 and BWI76_RS07795 are separated by 180 nucleotidesBWI76_RS07795 and BWI76_RS07800 are separated by 160 nucleotides BWI76_RS07780: BWI76_RS07780 - hypothetical protein, at 1,650,686 to 1,650,883 _RS07780 BWI76_RS07785: BWI76_RS07785 - transcriptional regulator, at 1,650,880 to 1,651,284 _RS07785 BWI76_RS07790: BWI76_RS07790 - plasmid stabilization protein, at 1,651,265 to 1,651,566 _RS07790 BWI76_RS07795: BWI76_RS07795 - oxidoreductase, at 1,651,747 to 1,652,835 _RS07795 BWI76_RS07800: BWI76_RS07800 - ABC transporter, at 1,652,996 to 1,654,498 _RS07800 Position (kb) 1651 1652 1653Strain fitness (log2 ratio) -2 -1 0 1at 1650.773 kb on - strand, within BWI76_RS07780at 1650.886 kb on - strandat 1650.966 kb on + strand, within BWI76_RS07785at 1651.005 kb on + strand, within BWI76_RS07785at 1651.288 kb on - strandat 1651.430 kb on - strand, within BWI76_RS07790at 1651.827 kb on + strandat 1652.061 kb on - strand, within BWI76_RS07795at 1652.160 kb on - strand, within BWI76_RS07795at 1652.161 kb on - strand, within BWI76_RS07795at 1652.237 kb on - strand, within BWI76_RS07795at 1652.552 kb on - strand, within BWI76_RS07795at 1652.711 kb on + strand, within BWI76_RS07795at 1652.719 kb on - strand, within BWI76_RS07795at 1652.724 kb on - strand, within BWI76_RS07795at 1652.747 kb on - strandat 1653.212 kb on - strand, within BWI76_RS07800at 1653.261 kb on - strand, within BWI76_RS07800at 1653.289 kb on - strand, within BWI76_RS07800at 1653.573 kb on - strand, within BWI76_RS07800at 1653.717 kb on + strand, within BWI76_RS07800at 1653.725 kb on - strand, within BWI76_RS07800at 1653.762 kb on + strand, within BWI76_RS07800at 1653.762 kb on + strand, within BWI76_RS07800at 1653.770 kb on - strand, within BWI76_RS07800

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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1,650,773 - BWI76_RS07780 0.44 -0.4
1,650,886 - +0.0
1,650,966 + BWI76_RS07785 0.21 +0.9
1,651,005 + BWI76_RS07785 0.31 +0.4
1,651,288 - +0.5
1,651,430 - BWI76_RS07790 0.55 -1.0
1,651,827 + +0.4
1,652,061 - BWI76_RS07795 0.29 +0.6
1,652,160 - BWI76_RS07795 0.38 +0.6
1,652,161 - BWI76_RS07795 0.38 -1.1
1,652,237 - BWI76_RS07795 0.45 +0.3
1,652,552 - BWI76_RS07795 0.74 +0.4
1,652,711 + BWI76_RS07795 0.89 +0.9
1,652,719 - BWI76_RS07795 0.89 +0.8
1,652,724 - BWI76_RS07795 0.90 +0.7
1,652,747 - +0.5
1,653,212 - BWI76_RS07800 0.14 +0.0
1,653,261 - BWI76_RS07800 0.18 +0.2
1,653,289 - BWI76_RS07800 0.19 -0.1
1,653,573 - BWI76_RS07800 0.38 -0.0
1,653,717 + BWI76_RS07800 0.48 -0.9
1,653,725 - BWI76_RS07800 0.49 -0.2
1,653,762 + BWI76_RS07800 0.51 -2.0
1,653,762 + BWI76_RS07800 0.51 -0.4
1,653,770 - BWI76_RS07800 0.51 -0.1

Or see this region's nucleotide sequence