Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21770

Experiment: L-Malic (C) with ammonium chloride; anaerobic; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21765 and AZOBR_RS21770 are separated by 8 nucleotidesAZOBR_RS21770 and AZOBR_RS21775 are separated by 8 nucleotides AZOBR_RS21765: AZOBR_RS21765 - peptide ABC transporter permease, at 1,658,945 to 1,659,955 _RS21765 AZOBR_RS21770: AZOBR_RS21770 - peptide ABC transporter, at 1,659,964 to 1,660,890 _RS21770 AZOBR_RS21775: AZOBR_RS21775 - peptide ABC transporter ATP-binding protein, at 1,660,899 to 1,661,888 _RS21775 Position (kb) 1659 1660 1661Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1659.150 kb on - strand, within AZOBR_RS21765at 1659.461 kb on + strand, within AZOBR_RS21765at 1659.461 kb on + strand, within AZOBR_RS21765at 1659.462 kb on - strand, within AZOBR_RS21765at 1659.462 kb on - strand, within AZOBR_RS21765at 1659.464 kb on + strand, within AZOBR_RS21765at 1659.464 kb on + strand, within AZOBR_RS21765at 1659.642 kb on - strand, within AZOBR_RS21765at 1659.642 kb on - strand, within AZOBR_RS21765at 1660.057 kb on + strand, within AZOBR_RS21770at 1660.058 kb on - strand, within AZOBR_RS21770at 1660.513 kb on + strand, within AZOBR_RS21770at 1660.514 kb on - strand, within AZOBR_RS21770at 1660.561 kb on + strand, within AZOBR_RS21770at 1660.561 kb on + strand, within AZOBR_RS21770at 1661.580 kb on + strand, within AZOBR_RS21775at 1661.581 kb on - strand, within AZOBR_RS21775at 1661.581 kb on - strand, within AZOBR_RS21775at 1661.644 kb on - strand, within AZOBR_RS21775at 1661.844 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 8 days
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1,659,150 - AZOBR_RS21765 0.20 -2.0
1,659,461 + AZOBR_RS21765 0.51 -3.2
1,659,461 + AZOBR_RS21765 0.51 -3.1
1,659,462 - AZOBR_RS21765 0.51 -2.4
1,659,462 - AZOBR_RS21765 0.51 -2.7
1,659,464 + AZOBR_RS21765 0.51 -4.0
1,659,464 + AZOBR_RS21765 0.51 -1.3
1,659,642 - AZOBR_RS21765 0.69 -2.2
1,659,642 - AZOBR_RS21765 0.69 -2.3
1,660,057 + AZOBR_RS21770 0.10 -0.9
1,660,058 - AZOBR_RS21770 0.10 -2.4
1,660,513 + AZOBR_RS21770 0.59 -3.2
1,660,514 - AZOBR_RS21770 0.59 -1.9
1,660,561 + AZOBR_RS21770 0.64 -1.5
1,660,561 + AZOBR_RS21770 0.64 -1.2
1,661,580 + AZOBR_RS21775 0.69 +0.4
1,661,581 - AZOBR_RS21775 0.69 -2.3
1,661,581 - AZOBR_RS21775 0.69 -1.1
1,661,644 - AZOBR_RS21775 0.75 -1.6
1,661,844 + -0.2

Or see this region's nucleotide sequence