Experiment: L-Malic (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS21280 and AZOBR_RS21285 overlap by 112 nucleotides AZOBR_RS21285 and AZOBR_RS21290 are separated by 200 nucleotides AZOBR_RS21290 and AZOBR_RS21295 are separated by 49 nucleotides AZOBR_RS21295 and AZOBR_RS21300 are separated by 216 nucleotides
AZOBR_RS21280: AZOBR_RS21280 - exported protein of unknown function, at 1,557,200 to 1,558,558
_RS21280
AZOBR_RS21285: AZOBR_RS21285 - hypothetical protein, at 1,558,447 to 1,559,226
_RS21285
AZOBR_RS21290: AZOBR_RS21290 - hypothetical protein, at 1,559,427 to 1,559,948
_RS21290
AZOBR_RS21295: AZOBR_RS21295 - conserved exported protein of unknown function, at 1,559,998 to 1,560,513
_RS21295
AZOBR_RS21300: AZOBR_RS21300 - conserved exported protein of unknown function, at 1,560,730 to 1,561,494
_RS21300
Position (kb)
1559
1560 Strain fitness (log2 ratio)
-1
0
1 at 1558.625 kb on - strand, within AZOBR_RS21285 at 1559.512 kb on - strand, within AZOBR_RS21290 at 1559.535 kb on + strand, within AZOBR_RS21290 at 1559.895 kb on + strand, within AZOBR_RS21290 at 1559.896 kb on - strand at 1559.896 kb on - strand at 1559.896 kb on - strand at 1560.661 kb on + strand at 1560.662 kb on - strand at 1560.662 kb on - strand at 1560.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 8 days remove 1,558,625 - AZOBR_RS21285 0.23 -0.1 1,559,512 - AZOBR_RS21290 0.16 +1.6 1,559,535 + AZOBR_RS21290 0.21 -0.0 1,559,895 + AZOBR_RS21290 0.90 +0.2 1,559,896 - +0.3 1,559,896 - +1.0 1,559,896 - -1.5 1,560,661 + +0.3 1,560,662 - +0.2 1,560,662 - +0.5 1,560,662 - -0.9
Or see this region's nucleotide sequence