Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18165

Experiment: L-Malic (C) with ammonium chloride; anaerobic; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18160 and AZOBR_RS18165 are separated by 46 nucleotidesAZOBR_RS18165 and AZOBR_RS18170 are separated by 130 nucleotides AZOBR_RS18160: AZOBR_RS18160 - fumarylacetoacetate hydrolase, at 831,867 to 833,012 _RS18160 AZOBR_RS18165: AZOBR_RS18165 - 2 5-dioxovalerate dehydrogenase, at 833,059 to 834,639 _RS18165 AZOBR_RS18170: AZOBR_RS18170 - sugar ABC transporter, at 834,770 to 836,005 _RS18170 Position (kb) 833 834 835Strain fitness (log2 ratio) -2 -1 0 1 2at 832.347 kb on + strand, within AZOBR_RS18160at 832.348 kb on - strand, within AZOBR_RS18160at 833.810 kb on - strand, within AZOBR_RS18165at 834.710 kb on + strandat 834.710 kb on + strandat 834.711 kb on - strandat 835.062 kb on - strand, within AZOBR_RS18170at 835.145 kb on + strand, within AZOBR_RS18170at 835.146 kb on - strand, within AZOBR_RS18170at 835.196 kb on + strand, within AZOBR_RS18170at 835.196 kb on + strand, within AZOBR_RS18170at 835.196 kb on + strand, within AZOBR_RS18170at 835.197 kb on - strand, within AZOBR_RS18170at 835.208 kb on + strand, within AZOBR_RS18170at 835.208 kb on + strand, within AZOBR_RS18170at 835.209 kb on - strand, within AZOBR_RS18170at 835.298 kb on + strand, within AZOBR_RS18170at 835.298 kb on + strand, within AZOBR_RS18170at 835.298 kb on + strand, within AZOBR_RS18170at 835.299 kb on - strand, within AZOBR_RS18170at 835.346 kb on + strand, within AZOBR_RS18170at 835.448 kb on + strand, within AZOBR_RS18170at 835.460 kb on + strand, within AZOBR_RS18170at 835.502 kb on + strand, within AZOBR_RS18170at 835.503 kb on - strand, within AZOBR_RS18170at 835.503 kb on - strand, within AZOBR_RS18170

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 8 days
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832,347 + AZOBR_RS18160 0.42 +0.4
832,348 - AZOBR_RS18160 0.42 +0.2
833,810 - AZOBR_RS18165 0.48 -2.0
834,710 + +0.9
834,710 + -1.1
834,711 - +1.3
835,062 - AZOBR_RS18170 0.24 +0.7
835,145 + AZOBR_RS18170 0.30 -0.8
835,146 - AZOBR_RS18170 0.30 -1.5
835,196 + AZOBR_RS18170 0.34 -0.5
835,196 + AZOBR_RS18170 0.34 -0.2
835,196 + AZOBR_RS18170 0.34 +0.8
835,197 - AZOBR_RS18170 0.35 +1.0
835,208 + AZOBR_RS18170 0.35 +0.5
835,208 + AZOBR_RS18170 0.35 -0.9
835,209 - AZOBR_RS18170 0.36 +0.2
835,298 + AZOBR_RS18170 0.43 -0.1
835,298 + AZOBR_RS18170 0.43 +0.3
835,298 + AZOBR_RS18170 0.43 -1.2
835,299 - AZOBR_RS18170 0.43 -0.0
835,346 + AZOBR_RS18170 0.47 +2.1
835,448 + AZOBR_RS18170 0.55 +0.1
835,460 + AZOBR_RS18170 0.56 +0.7
835,502 + AZOBR_RS18170 0.59 +0.9
835,503 - AZOBR_RS18170 0.59 -0.1
835,503 - AZOBR_RS18170 0.59 +0.8

Or see this region's nucleotide sequence