Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10375

Experiment: L-Malic (C) with ammonium chloride; anaerobic; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10370 and AZOBR_RS10375 are separated by 380 nucleotidesAZOBR_RS10375 and AZOBR_RS10380 are separated by 87 nucleotidesAZOBR_RS10380 and AZOBR_RS10385 are separated by 133 nucleotides AZOBR_RS10370: AZOBR_RS10370 - hypothetical protein, at 2,177,980 to 2,180,157 _RS10370 AZOBR_RS10375: AZOBR_RS10375 - glyceraldehyde-3-phosphate dehydrogenase, at 2,180,538 to 2,181,545 _RS10375 AZOBR_RS10380: AZOBR_RS10380 - HicB, at 2,181,633 to 2,181,977 _RS10380 AZOBR_RS10385: AZOBR_RS10385 - hypothetical protein, at 2,182,111 to 2,182,554 _RS10385 Position (kb) 2180 2181 2182Strain fitness (log2 ratio) -2 -1 0 1at 2180.937 kb on + strand, within AZOBR_RS10375at 2181.082 kb on - strand, within AZOBR_RS10375at 2181.082 kb on - strand, within AZOBR_RS10375at 2181.543 kb on + strandat 2181.778 kb on + strand, within AZOBR_RS10380at 2181.778 kb on + strand, within AZOBR_RS10380at 2181.958 kb on + strandat 2181.958 kb on + strandat 2181.958 kb on + strandat 2181.965 kb on + strandat 2181.966 kb on - strandat 2181.966 kb on - strandat 2181.967 kb on + strandat 2181.967 kb on + strandat 2181.967 kb on + strandat 2181.967 kb on + strandat 2181.967 kb on + strandat 2181.967 kb on + strandat 2181.967 kb on + strandat 2181.968 kb on - strandat 2182.001 kb on - strandat 2182.001 kb on - strandat 2182.001 kb on - strandat 2182.001 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 8 days
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2,180,937 + AZOBR_RS10375 0.40 +0.2
2,181,082 - AZOBR_RS10375 0.54 +0.7
2,181,082 - AZOBR_RS10375 0.54 +0.1
2,181,543 + +0.1
2,181,778 + AZOBR_RS10380 0.42 -1.8
2,181,778 + AZOBR_RS10380 0.42 -0.5
2,181,958 + -0.0
2,181,958 + -1.3
2,181,958 + -0.4
2,181,965 + -0.6
2,181,966 - -0.3
2,181,966 - -0.1
2,181,967 + -1.6
2,181,967 + +1.2
2,181,967 + +0.3
2,181,967 + -0.3
2,181,967 + -1.3
2,181,967 + -0.0
2,181,967 + -1.2
2,181,968 - -0.6
2,182,001 - +0.3
2,182,001 - +1.2
2,182,001 - +1.0
2,182,001 - -0.2

Or see this region's nucleotide sequence