Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09720

Experiment: L-Malic (C) with ammonium chloride; anaerobic; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09715 and AZOBR_RS09720 are separated by 128 nucleotidesAZOBR_RS09720 and AZOBR_RS09725 are separated by 139 nucleotidesAZOBR_RS09725 and AZOBR_RS09730 are separated by 141 nucleotides AZOBR_RS09715: AZOBR_RS09715 - pantoate--beta-alanine ligase, at 2,034,619 to 2,035,485 _RS09715 AZOBR_RS09720: AZOBR_RS09720 - succinate-semialdehyde dehdyrogenase, at 2,035,614 to 2,037,107 _RS09720 AZOBR_RS09725: AZOBR_RS09725 - hypothetical protein, at 2,037,247 to 2,037,699 _RS09725 AZOBR_RS09730: AZOBR_RS09730 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 2,037,841 to 2,039,226 _RS09730 Position (kb) 2035 2036 2037 2038Strain fitness (log2 ratio) -2 -1 0 1at 2034.910 kb on + strand, within AZOBR_RS09715at 2034.911 kb on - strand, within AZOBR_RS09715at 2034.934 kb on + strand, within AZOBR_RS09715at 2034.935 kb on - strand, within AZOBR_RS09715at 2035.207 kb on + strand, within AZOBR_RS09715at 2035.208 kb on - strand, within AZOBR_RS09715at 2035.357 kb on + strand, within AZOBR_RS09715at 2035.559 kb on + strandat 2035.559 kb on + strandat 2035.559 kb on + strandat 2035.559 kb on + strandat 2035.560 kb on - strandat 2035.560 kb on - strandat 2035.560 kb on - strandat 2035.560 kb on - strandat 2035.560 kb on - strandat 2035.561 kb on + strandat 2035.561 kb on + strandat 2035.561 kb on + strandat 2035.562 kb on - strandat 2035.562 kb on - strandat 2035.620 kb on + strandat 2035.978 kb on - strand, within AZOBR_RS09720at 2036.491 kb on - strand, within AZOBR_RS09720at 2036.551 kb on - strand, within AZOBR_RS09720at 2036.648 kb on + strand, within AZOBR_RS09720at 2036.898 kb on + strand, within AZOBR_RS09720at 2036.899 kb on - strand, within AZOBR_RS09720at 2036.904 kb on + strand, within AZOBR_RS09720at 2036.904 kb on + strand, within AZOBR_RS09720at 2036.905 kb on - strand, within AZOBR_RS09720at 2036.953 kb on - strand, within AZOBR_RS09720at 2037.200 kb on - strandat 2037.200 kb on - strandat 2037.409 kb on + strand, within AZOBR_RS09725at 2037.409 kb on + strand, within AZOBR_RS09725at 2037.410 kb on - strand, within AZOBR_RS09725at 2037.410 kb on - strand, within AZOBR_RS09725at 2037.842 kb on + strandat 2037.842 kb on + strandat 2037.843 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 8 days
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2,034,910 + AZOBR_RS09715 0.34 +1.7
2,034,911 - AZOBR_RS09715 0.34 -1.6
2,034,934 + AZOBR_RS09715 0.36 +1.1
2,034,935 - AZOBR_RS09715 0.36 -0.2
2,035,207 + AZOBR_RS09715 0.68 -0.2
2,035,208 - AZOBR_RS09715 0.68 +0.1
2,035,357 + AZOBR_RS09715 0.85 +1.4
2,035,559 + -0.0
2,035,559 + -1.4
2,035,559 + -0.1
2,035,559 + -1.0
2,035,560 - +0.1
2,035,560 - -0.3
2,035,560 - +0.8
2,035,560 - -2.6
2,035,560 - +0.7
2,035,561 + +0.8
2,035,561 + +0.2
2,035,561 + -0.3
2,035,562 - -0.1
2,035,562 - +0.2
2,035,620 + -0.6
2,035,978 - AZOBR_RS09720 0.24 +0.5
2,036,491 - AZOBR_RS09720 0.59 -0.4
2,036,551 - AZOBR_RS09720 0.63 -0.1
2,036,648 + AZOBR_RS09720 0.69 -0.0
2,036,898 + AZOBR_RS09720 0.86 -0.5
2,036,899 - AZOBR_RS09720 0.86 +0.3
2,036,904 + AZOBR_RS09720 0.86 -0.1
2,036,904 + AZOBR_RS09720 0.86 +0.0
2,036,905 - AZOBR_RS09720 0.86 -0.0
2,036,953 - AZOBR_RS09720 0.90 +0.4
2,037,200 - -1.0
2,037,200 - -0.0
2,037,409 + AZOBR_RS09725 0.36 +0.3
2,037,409 + AZOBR_RS09725 0.36 -0.5
2,037,410 - AZOBR_RS09725 0.36 -0.7
2,037,410 - AZOBR_RS09725 0.36 -1.5
2,037,842 + +0.1
2,037,842 + -0.6
2,037,843 - +0.5

Or see this region's nucleotide sequence