Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04665

Experiment: L-Malic (C) with ammonium chloride; anaerobic; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS04660 and AZOBR_RS04665 are separated by 305 nucleotidesAZOBR_RS04665 and AZOBR_RS04670 are separated by 373 nucleotides AZOBR_RS04660: AZOBR_RS04660 - hypothetical protein, at 981,235 to 982,083 _RS04660 AZOBR_RS04665: AZOBR_RS04665 - hypothetical protein, at 982,389 to 983,135 _RS04665 AZOBR_RS04670: AZOBR_RS04670 - hypothetical protein, at 983,509 to 983,955 _RS04670 Position (kb) 982 983 984Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 981.556 kb on + strand, within AZOBR_RS04660at 981.556 kb on + strand, within AZOBR_RS04660at 981.556 kb on + strand, within AZOBR_RS04660at 981.844 kb on + strand, within AZOBR_RS04660at 982.621 kb on - strandat 982.632 kb on - strand, within AZOBR_RS04665at 983.274 kb on - strandat 983.363 kb on + strandat 983.363 kb on + strandat 983.464 kb on - strandat 983.594 kb on - strand, within AZOBR_RS04670at 983.642 kb on + strand, within AZOBR_RS04670at 983.753 kb on + strand, within AZOBR_RS04670at 983.754 kb on - strand, within AZOBR_RS04670at 983.906 kb on + strand, within AZOBR_RS04670at 983.906 kb on + strand, within AZOBR_RS04670at 983.906 kb on + strand, within AZOBR_RS04670at 983.907 kb on - strand, within AZOBR_RS04670at 983.984 kb on + strandat 983.985 kb on - strandat 983.985 kb on - strandat 983.985 kb on - strandat 983.985 kb on - strandat 983.985 kb on - strandat 983.985 kb on - strandat 984.128 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 8 days
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981,556 + AZOBR_RS04660 0.38 -0.0
981,556 + AZOBR_RS04660 0.38 +1.0
981,556 + AZOBR_RS04660 0.38 +0.6
981,844 + AZOBR_RS04660 0.72 +0.9
982,621 - +1.8
982,632 - AZOBR_RS04665 0.33 +0.5
983,274 - +0.2
983,363 + +0.2
983,363 + +0.1
983,464 - -0.7
983,594 - AZOBR_RS04670 0.19 -0.4
983,642 + AZOBR_RS04670 0.30 +0.9
983,753 + AZOBR_RS04670 0.55 +0.7
983,754 - AZOBR_RS04670 0.55 +0.8
983,906 + AZOBR_RS04670 0.89 -0.3
983,906 + AZOBR_RS04670 0.89 -0.0
983,906 + AZOBR_RS04670 0.89 -0.7
983,907 - AZOBR_RS04670 0.89 +0.0
983,984 + -1.2
983,985 - -0.0
983,985 - -3.2
983,985 - -0.4
983,985 - +0.3
983,985 - -0.7
983,985 - -0.6
984,128 + +0.1

Or see this region's nucleotide sequence