Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28355 and RR42_RS28360 are separated by 5 nucleotides RR42_RS28360 and RR42_RS28365 are separated by 12 nucleotides RR42_RS28365 and RR42_RS28370 are separated by 546 nucleotides
RR42_RS28355: RR42_RS28355 - amidohydrolase, at 1,722,407 to 1,723,411
_RS28355
RR42_RS28360: RR42_RS28360 - endoribonuclease L-PSP, at 1,723,417 to 1,723,818
_RS28360
RR42_RS28365: RR42_RS28365 - GntR family transcriptional regulator, at 1,723,831 to 1,724,544
_RS28365
RR42_RS28370: RR42_RS28370 - CoA-binding protein, at 1,725,091 to 1,727,196
_RS28370
Position (kb) 1723
1724
1725 Strain fitness (log2 ratio) -1
0
1
2 at 1722.859 kb on + strand, within RR42_RS28355 at 1722.861 kb on + strand, within RR42_RS28355 at 1722.861 kb on + strand, within RR42_RS28355 at 1722.862 kb on - strand, within RR42_RS28355 at 1722.933 kb on + strand, within RR42_RS28355 at 1722.942 kb on + strand, within RR42_RS28355 at 1723.086 kb on + strand, within RR42_RS28355 at 1723.086 kb on + strand, within RR42_RS28355 at 1723.086 kb on + strand, within RR42_RS28355 at 1723.086 kb on + strand, within RR42_RS28355 at 1723.087 kb on - strand, within RR42_RS28355 at 1723.087 kb on - strand, within RR42_RS28355 at 1723.343 kb on + strand at 1723.343 kb on + strand at 1723.344 kb on - strand at 1723.359 kb on + strand at 1723.462 kb on + strand, within RR42_RS28360 at 1723.489 kb on + strand, within RR42_RS28360 at 1723.489 kb on + strand, within RR42_RS28360 at 1723.583 kb on + strand, within RR42_RS28360 at 1723.584 kb on - strand, within RR42_RS28360 at 1723.645 kb on - strand, within RR42_RS28360 at 1723.795 kb on + strand at 1723.796 kb on - strand at 1723.796 kb on - strand at 1723.796 kb on - strand at 1723.810 kb on - strand at 1723.823 kb on + strand at 1724.073 kb on + strand, within RR42_RS28365 at 1724.074 kb on - strand, within RR42_RS28365 at 1724.087 kb on + strand, within RR42_RS28365 at 1724.087 kb on + strand, within RR42_RS28365 at 1724.087 kb on + strand, within RR42_RS28365 at 1724.088 kb on - strand, within RR42_RS28365 at 1724.088 kb on - strand, within RR42_RS28365 at 1724.091 kb on + strand, within RR42_RS28365 at 1724.091 kb on + strand, within RR42_RS28365 at 1724.091 kb on + strand, within RR42_RS28365 at 1724.091 kb on + strand, within RR42_RS28365 at 1724.091 kb on + strand, within RR42_RS28365 at 1724.092 kb on - strand, within RR42_RS28365 at 1724.092 kb on - strand, within RR42_RS28365 at 1724.092 kb on - strand, within RR42_RS28365 at 1724.108 kb on + strand, within RR42_RS28365 at 1724.108 kb on + strand, within RR42_RS28365 at 1724.109 kb on - strand, within RR42_RS28365 at 1724.145 kb on - strand, within RR42_RS28365 at 1724.274 kb on - strand, within RR42_RS28365 at 1724.274 kb on - strand, within RR42_RS28365 at 1724.820 kb on - strand at 1725.098 kb on + strand at 1725.099 kb on - strand at 1725.533 kb on + strand, within RR42_RS28370 at 1725.533 kb on + strand, within RR42_RS28370
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 1,722,859 + RR42_RS28355 0.45 +0.2 1,722,861 + RR42_RS28355 0.45 -0.9 1,722,861 + RR42_RS28355 0.45 +0.3 1,722,862 - RR42_RS28355 0.45 +1.3 1,722,933 + RR42_RS28355 0.52 +0.2 1,722,942 + RR42_RS28355 0.53 -0.6 1,723,086 + RR42_RS28355 0.68 +1.9 1,723,086 + RR42_RS28355 0.68 -0.1 1,723,086 + RR42_RS28355 0.68 -0.3 1,723,086 + RR42_RS28355 0.68 +0.3 1,723,087 - RR42_RS28355 0.68 +0.4 1,723,087 - RR42_RS28355 0.68 +0.2 1,723,343 + -0.5 1,723,343 + +0.7 1,723,344 - -0.9 1,723,359 + +0.3 1,723,462 + RR42_RS28360 0.11 +0.2 1,723,489 + RR42_RS28360 0.18 -0.0 1,723,489 + RR42_RS28360 0.18 +0.8 1,723,583 + RR42_RS28360 0.41 -0.0 1,723,584 - RR42_RS28360 0.42 +1.4 1,723,645 - RR42_RS28360 0.57 -0.8 1,723,795 + -0.8 1,723,796 - -1.0 1,723,796 - +0.4 1,723,796 - +0.9 1,723,810 - +0.4 1,723,823 + +0.2 1,724,073 + RR42_RS28365 0.34 +0.2 1,724,074 - RR42_RS28365 0.34 -0.1 1,724,087 + RR42_RS28365 0.36 -0.7 1,724,087 + RR42_RS28365 0.36 -0.6 1,724,087 + RR42_RS28365 0.36 -0.1 1,724,088 - RR42_RS28365 0.36 -0.3 1,724,088 - RR42_RS28365 0.36 -0.1 1,724,091 + RR42_RS28365 0.36 +0.3 1,724,091 + RR42_RS28365 0.36 +0.7 1,724,091 + RR42_RS28365 0.36 +0.3 1,724,091 + RR42_RS28365 0.36 -0.2 1,724,091 + RR42_RS28365 0.36 +0.1 1,724,092 - RR42_RS28365 0.37 -1.6 1,724,092 - RR42_RS28365 0.37 +0.8 1,724,092 - RR42_RS28365 0.37 +0.5 1,724,108 + RR42_RS28365 0.39 -0.3 1,724,108 + RR42_RS28365 0.39 -0.7 1,724,109 - RR42_RS28365 0.39 -0.3 1,724,145 - RR42_RS28365 0.44 -0.5 1,724,274 - RR42_RS28365 0.62 +0.3 1,724,274 - RR42_RS28365 0.62 +0.2 1,724,820 - -1.4 1,725,098 + -0.2 1,725,099 - +0.6 1,725,533 + RR42_RS28370 0.21 +0.6 1,725,533 + RR42_RS28370 0.21 -0.7
Or see this region's nucleotide sequence