Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24155 and RR42_RS24160 are separated by 68 nucleotides RR42_RS24160 and RR42_RS24165 are separated by 60 nucleotides
RR42_RS24155: RR42_RS24155 - monooxygenase, at 745,352 to 746,494
_RS24155
RR42_RS24160: RR42_RS24160 - hypothetical protein, at 746,563 to 747,075
_RS24160
RR42_RS24165: RR42_RS24165 - gentisate 1,2-dioxygenase, at 747,136 to 748,164
_RS24165
Position (kb) 746
747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 745.659 kb on + strand, within RR42_RS24155 at 745.681 kb on - strand, within RR42_RS24155 at 745.689 kb on + strand, within RR42_RS24155 at 745.689 kb on + strand, within RR42_RS24155 at 745.817 kb on + strand, within RR42_RS24155 at 745.817 kb on + strand, within RR42_RS24155 at 745.882 kb on + strand, within RR42_RS24155 at 745.882 kb on + strand, within RR42_RS24155 at 745.882 kb on + strand, within RR42_RS24155 at 745.883 kb on - strand, within RR42_RS24155 at 745.891 kb on - strand, within RR42_RS24155 at 745.920 kb on - strand, within RR42_RS24155 at 746.209 kb on - strand, within RR42_RS24155 at 746.209 kb on - strand, within RR42_RS24155 at 746.209 kb on - strand, within RR42_RS24155 at 746.391 kb on - strand at 746.451 kb on + strand at 746.781 kb on + strand, within RR42_RS24160 at 746.803 kb on - strand, within RR42_RS24160 at 746.890 kb on + strand, within RR42_RS24160 at 746.890 kb on + strand, within RR42_RS24160 at 746.891 kb on - strand, within RR42_RS24160 at 746.968 kb on + strand, within RR42_RS24160 at 747.004 kb on + strand, within RR42_RS24160 at 747.012 kb on + strand, within RR42_RS24160 at 747.023 kb on + strand, within RR42_RS24160 at 747.073 kb on + strand at 747.073 kb on + strand at 747.073 kb on + strand at 747.073 kb on + strand at 747.073 kb on + strand at 747.074 kb on - strand at 747.074 kb on - strand at 747.281 kb on - strand, within RR42_RS24165 at 747.410 kb on + strand, within RR42_RS24165 at 747.410 kb on + strand, within RR42_RS24165 at 747.490 kb on + strand, within RR42_RS24165 at 747.491 kb on - strand, within RR42_RS24165 at 747.491 kb on - strand, within RR42_RS24165 at 747.543 kb on + strand, within RR42_RS24165 at 747.544 kb on - strand, within RR42_RS24165 at 747.596 kb on + strand, within RR42_RS24165 at 747.597 kb on - strand, within RR42_RS24165 at 747.776 kb on - strand, within RR42_RS24165 at 747.859 kb on + strand, within RR42_RS24165 at 747.859 kb on + strand, within RR42_RS24165 at 747.860 kb on - strand, within RR42_RS24165 at 747.860 kb on - strand, within RR42_RS24165 at 747.860 kb on - strand, within RR42_RS24165 at 747.860 kb on - strand, within RR42_RS24165 at 747.911 kb on + strand, within RR42_RS24165 at 747.911 kb on + strand, within RR42_RS24165 at 747.911 kb on + strand, within RR42_RS24165 at 747.912 kb on - strand, within RR42_RS24165 at 747.912 kb on - strand, within RR42_RS24165 at 747.917 kb on - strand, within RR42_RS24165 at 747.917 kb on - strand, within RR42_RS24165 at 747.954 kb on + strand, within RR42_RS24165 at 748.017 kb on + strand, within RR42_RS24165 at 748.018 kb on - strand, within RR42_RS24165 at 748.074 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 745,659 + RR42_RS24155 0.27 -0.7 745,681 - RR42_RS24155 0.29 +0.8 745,689 + RR42_RS24155 0.29 +0.4 745,689 + RR42_RS24155 0.29 +0.1 745,817 + RR42_RS24155 0.41 +0.7 745,817 + RR42_RS24155 0.41 +1.1 745,882 + RR42_RS24155 0.46 -0.9 745,882 + RR42_RS24155 0.46 +0.2 745,882 + RR42_RS24155 0.46 +0.4 745,883 - RR42_RS24155 0.46 -0.1 745,891 - RR42_RS24155 0.47 -1.3 745,920 - RR42_RS24155 0.50 +0.4 746,209 - RR42_RS24155 0.75 +0.4 746,209 - RR42_RS24155 0.75 +0.2 746,209 - RR42_RS24155 0.75 +1.7 746,391 - -1.4 746,451 + -0.2 746,781 + RR42_RS24160 0.42 +0.5 746,803 - RR42_RS24160 0.47 +0.5 746,890 + RR42_RS24160 0.64 +0.6 746,890 + RR42_RS24160 0.64 +1.0 746,891 - RR42_RS24160 0.64 -0.1 746,968 + RR42_RS24160 0.79 +0.2 747,004 + RR42_RS24160 0.86 +0.3 747,012 + RR42_RS24160 0.88 +0.2 747,023 + RR42_RS24160 0.90 -0.4 747,073 + +0.8 747,073 + -0.9 747,073 + -0.1 747,073 + -1.4 747,073 + +1.6 747,074 - +0.3 747,074 - +1.7 747,281 - RR42_RS24165 0.14 -0.2 747,410 + RR42_RS24165 0.27 -0.3 747,410 + RR42_RS24165 0.27 -0.3 747,490 + RR42_RS24165 0.34 +0.4 747,491 - RR42_RS24165 0.34 -0.6 747,491 - RR42_RS24165 0.34 +0.1 747,543 + RR42_RS24165 0.40 -0.2 747,544 - RR42_RS24165 0.40 -0.4 747,596 + RR42_RS24165 0.45 +0.1 747,597 - RR42_RS24165 0.45 -0.6 747,776 - RR42_RS24165 0.62 -1.3 747,859 + RR42_RS24165 0.70 +0.4 747,859 + RR42_RS24165 0.70 -0.2 747,860 - RR42_RS24165 0.70 +1.7 747,860 - RR42_RS24165 0.70 +0.2 747,860 - RR42_RS24165 0.70 -0.4 747,860 - RR42_RS24165 0.70 -0.8 747,911 + RR42_RS24165 0.75 +0.5 747,911 + RR42_RS24165 0.75 -0.3 747,911 + RR42_RS24165 0.75 +1.9 747,912 - RR42_RS24165 0.75 +0.3 747,912 - RR42_RS24165 0.75 -0.3 747,917 - RR42_RS24165 0.76 -0.7 747,917 - RR42_RS24165 0.76 -3.4 747,954 + RR42_RS24165 0.79 +0.9 748,017 + RR42_RS24165 0.86 +0.4 748,018 - RR42_RS24165 0.86 +0.9 748,074 + -0.1
Or see this region's nucleotide sequence