Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23415

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23410 and RR42_RS23415 are separated by 225 nucleotidesRR42_RS23415 and RR42_RS23420 are separated by 54 nucleotidesRR42_RS23420 and RR42_RS23425 are separated by 44 nucleotides RR42_RS23410: RR42_RS23410 - hypothetical protein, at 579,749 to 580,648 _RS23410 RR42_RS23415: RR42_RS23415 - 4-carboxymuconolactone decarboxylase, at 580,874 to 581,428 _RS23415 RR42_RS23420: RR42_RS23420 - 3-oxoacyl-ACP reductase, at 581,483 to 582,283 _RS23420 RR42_RS23425: RR42_RS23425 - hypothetical protein, at 582,328 to 583,323 _RS23425 Position (kb) 580 581 582Strain fitness (log2 ratio) -2 -1 0 1at 579.947 kb on + strand, within RR42_RS23410at 579.981 kb on + strand, within RR42_RS23410at 580.041 kb on + strand, within RR42_RS23410at 580.041 kb on + strand, within RR42_RS23410at 580.042 kb on - strand, within RR42_RS23410at 580.202 kb on + strand, within RR42_RS23410at 580.202 kb on + strand, within RR42_RS23410at 580.203 kb on - strand, within RR42_RS23410at 580.338 kb on + strand, within RR42_RS23410at 580.338 kb on + strand, within RR42_RS23410at 580.486 kb on + strand, within RR42_RS23410at 580.697 kb on - strandat 580.727 kb on + strandat 580.728 kb on - strandat 580.728 kb on - strandat 580.762 kb on + strandat 580.965 kb on + strand, within RR42_RS23415at 580.965 kb on + strand, within RR42_RS23415at 580.965 kb on + strand, within RR42_RS23415at 581.033 kb on + strand, within RR42_RS23415at 581.034 kb on - strand, within RR42_RS23415at 581.034 kb on - strand, within RR42_RS23415at 581.243 kb on - strand, within RR42_RS23415at 581.282 kb on + strand, within RR42_RS23415at 581.282 kb on + strand, within RR42_RS23415at 581.283 kb on - strand, within RR42_RS23415at 581.322 kb on + strand, within RR42_RS23415at 581.348 kb on + strand, within RR42_RS23415at 581.476 kb on - strandat 581.476 kb on - strandat 581.834 kb on - strand, within RR42_RS23420at 581.966 kb on + strand, within RR42_RS23420at 582.020 kb on + strand, within RR42_RS23420at 582.399 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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579,947 + RR42_RS23410 0.22 -0.2
579,981 + RR42_RS23410 0.26 +0.1
580,041 + RR42_RS23410 0.32 +0.2
580,041 + RR42_RS23410 0.32 -0.9
580,042 - RR42_RS23410 0.33 -0.2
580,202 + RR42_RS23410 0.50 -0.4
580,202 + RR42_RS23410 0.50 -1.0
580,203 - RR42_RS23410 0.50 +0.6
580,338 + RR42_RS23410 0.65 -1.4
580,338 + RR42_RS23410 0.65 -0.9
580,486 + RR42_RS23410 0.82 +0.2
580,697 - -0.3
580,727 + +0.1
580,728 - +1.1
580,728 - +0.2
580,762 + -0.1
580,965 + RR42_RS23415 0.16 +0.4
580,965 + RR42_RS23415 0.16 -0.3
580,965 + RR42_RS23415 0.16 +0.7
581,033 + RR42_RS23415 0.29 +0.7
581,034 - RR42_RS23415 0.29 +0.6
581,034 - RR42_RS23415 0.29 +0.1
581,243 - RR42_RS23415 0.66 +0.1
581,282 + RR42_RS23415 0.74 +0.5
581,282 + RR42_RS23415 0.74 -2.5
581,283 - RR42_RS23415 0.74 -0.1
581,322 + RR42_RS23415 0.81 -0.7
581,348 + RR42_RS23415 0.85 +0.1
581,476 - -0.9
581,476 - +0.1
581,834 - RR42_RS23420 0.44 +0.4
581,966 + RR42_RS23420 0.60 +0.5
582,020 + RR42_RS23420 0.67 +0.5
582,399 - +0.4

Or see this region's nucleotide sequence