Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21885 and RR42_RS21890 are separated by 36 nucleotides RR42_RS21890 and RR42_RS21895 are separated by 648 nucleotides
RR42_RS21885: RR42_RS21885 - RND transporter MFP subunit, at 237,026 to 238,192
_RS21885
RR42_RS21890: RR42_RS21890 - transporter, at 238,229 to 239,455
_RS21890
RR42_RS21895: RR42_RS21895 - hypothetical protein, at 240,104 to 240,790
_RS21895
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 237.282 kb on + strand, within RR42_RS21885 at 237.283 kb on - strand, within RR42_RS21885 at 237.283 kb on - strand, within RR42_RS21885 at 237.283 kb on - strand, within RR42_RS21885 at 237.534 kb on + strand, within RR42_RS21885 at 237.534 kb on + strand, within RR42_RS21885 at 237.535 kb on - strand, within RR42_RS21885 at 237.783 kb on + strand, within RR42_RS21885 at 237.783 kb on + strand, within RR42_RS21885 at 237.783 kb on + strand, within RR42_RS21885 at 237.783 kb on + strand, within RR42_RS21885 at 237.783 kb on + strand, within RR42_RS21885 at 237.784 kb on - strand, within RR42_RS21885 at 237.784 kb on - strand, within RR42_RS21885 at 237.796 kb on - strand, within RR42_RS21885 at 237.796 kb on - strand, within RR42_RS21885 at 237.906 kb on + strand, within RR42_RS21885 at 238.137 kb on + strand at 238.154 kb on - strand at 238.208 kb on - strand at 238.208 kb on - strand at 238.266 kb on + strand at 238.266 kb on + strand at 238.267 kb on - strand at 238.267 kb on - strand at 238.374 kb on + strand, within RR42_RS21890 at 238.563 kb on + strand, within RR42_RS21890 at 238.563 kb on + strand, within RR42_RS21890 at 238.564 kb on - strand, within RR42_RS21890 at 238.899 kb on + strand, within RR42_RS21890 at 238.899 kb on + strand, within RR42_RS21890 at 238.971 kb on + strand, within RR42_RS21890 at 238.972 kb on - strand, within RR42_RS21890 at 239.107 kb on - strand, within RR42_RS21890 at 239.118 kb on + strand, within RR42_RS21890 at 239.118 kb on + strand, within RR42_RS21890 at 239.119 kb on - strand, within RR42_RS21890 at 239.341 kb on + strand at 239.341 kb on + strand at 239.342 kb on - strand at 239.342 kb on - strand at 239.344 kb on - strand at 239.344 kb on - strand at 239.344 kb on - strand at 239.344 kb on - strand at 239.344 kb on - strand at 239.578 kb on + strand at 239.672 kb on - strand at 239.834 kb on + strand at 239.835 kb on - strand at 239.839 kb on + strand at 239.840 kb on - strand at 239.893 kb on + strand at 239.926 kb on + strand at 239.927 kb on - strand at 239.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 237,282 + RR42_RS21885 0.22 -0.3 237,283 - RR42_RS21885 0.22 -2.8 237,283 - RR42_RS21885 0.22 -0.5 237,283 - RR42_RS21885 0.22 +0.3 237,534 + RR42_RS21885 0.44 +0.9 237,534 + RR42_RS21885 0.44 +0.3 237,535 - RR42_RS21885 0.44 +0.6 237,783 + RR42_RS21885 0.65 -0.9 237,783 + RR42_RS21885 0.65 -0.4 237,783 + RR42_RS21885 0.65 +0.4 237,783 + RR42_RS21885 0.65 -0.6 237,783 + RR42_RS21885 0.65 +0.6 237,784 - RR42_RS21885 0.65 +0.5 237,784 - RR42_RS21885 0.65 +0.5 237,796 - RR42_RS21885 0.66 +0.5 237,796 - RR42_RS21885 0.66 -0.0 237,906 + RR42_RS21885 0.75 -0.2 238,137 + -0.2 238,154 - +0.0 238,208 - -0.3 238,208 - +0.4 238,266 + +0.1 238,266 + -0.1 238,267 - +0.3 238,267 - -0.6 238,374 + RR42_RS21890 0.12 +0.4 238,563 + RR42_RS21890 0.27 -1.3 238,563 + RR42_RS21890 0.27 -1.9 238,564 - RR42_RS21890 0.27 -0.2 238,899 + RR42_RS21890 0.55 -0.5 238,899 + RR42_RS21890 0.55 +0.1 238,971 + RR42_RS21890 0.60 -0.5 238,972 - RR42_RS21890 0.61 -0.0 239,107 - RR42_RS21890 0.72 -0.0 239,118 + RR42_RS21890 0.72 -1.7 239,118 + RR42_RS21890 0.72 -0.0 239,119 - RR42_RS21890 0.73 -0.1 239,341 + -0.1 239,341 + -1.3 239,342 - -0.1 239,342 - -0.2 239,344 - +0.2 239,344 - -0.0 239,344 - -0.1 239,344 - -0.3 239,344 - -1.6 239,578 + -0.5 239,672 - -0.7 239,834 + -0.6 239,835 - +0.3 239,839 + +0.8 239,840 - +0.3 239,893 + +0.3 239,926 + +0.3 239,927 - -2.2 239,931 - -0.5
Or see this region's nucleotide sequence