Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20190 and RR42_RS20195 are separated by 244 nucleotides RR42_RS20195 and RR42_RS20200 are separated by 378 nucleotides
RR42_RS20190: RR42_RS20190 - ATP synthase subunit A, at 4,366,721 to 4,367,584
_RS20190
RR42_RS20195: RR42_RS20195 - ATPase F0F1, at 4,367,829 to 4,368,329
_RS20195
RR42_RS20200: RR42_RS20200 - chromosome partitioning protein ParB, at 4,368,708 to 4,369,610
_RS20200
Position (kb)
4367
4368
4369 Strain fitness (log2 ratio)
-2
-1
0
1 at 4367.698 kb on - strand at 4367.748 kb on - strand at 4367.855 kb on - strand at 4368.064 kb on - strand, within RR42_RS20195 at 4368.449 kb on - strand at 4368.500 kb on - strand at 4368.500 kb on - strand at 4368.540 kb on - strand at 4368.549 kb on - strand at 4368.570 kb on - strand at 4368.570 kb on - strand at 4368.570 kb on - strand at 4368.570 kb on - strand at 4368.570 kb on - strand at 4368.570 kb on - strand at 4368.570 kb on - strand at 4368.571 kb on + strand at 4368.572 kb on - strand at 4368.572 kb on - strand at 4368.572 kb on - strand at 4368.572 kb on - strand at 4368.572 kb on - strand at 4368.572 kb on - strand at 4368.599 kb on + strand at 4368.600 kb on - strand at 4368.600 kb on - strand at 4368.600 kb on - strand at 4368.690 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 4,367,698 - +1.0 4,367,748 - -0.3 4,367,855 - -0.7 4,368,064 - RR42_RS20195 0.47 -1.9 4,368,449 - +1.5 4,368,500 - +0.1 4,368,500 - +0.1 4,368,540 - -0.3 4,368,549 - -1.1 4,368,570 - +1.4 4,368,570 - +0.6 4,368,570 - +0.0 4,368,570 - +0.1 4,368,570 - -0.3 4,368,570 - -0.0 4,368,570 - +0.4 4,368,571 + -1.0 4,368,572 - -0.5 4,368,572 - -0.0 4,368,572 - +1.2 4,368,572 - -0.8 4,368,572 - +1.2 4,368,572 - +0.2 4,368,599 + -0.4 4,368,600 - -1.1 4,368,600 - +0.5 4,368,600 - -1.2 4,368,690 - +0.8
Or see this region's nucleotide sequence