Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14920

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14910 and RR42_RS14915 are separated by 191 nucleotidesRR42_RS14915 and RR42_RS14920 are separated by 10 nucleotidesRR42_RS14920 and RR42_RS14925 are separated by 74 nucleotidesRR42_RS14925 and RR42_RS14930 are separated by 52 nucleotides RR42_RS14910: RR42_RS14910 - peptidylprolyl isomerase, at 3,224,205 to 3,225,146 _RS14910 RR42_RS14915: RR42_RS14915 - hypothetical protein, at 3,225,338 to 3,226,105 _RS14915 RR42_RS14920: RR42_RS14920 - membrane protein, at 3,226,116 to 3,227,891 _RS14920 RR42_RS14925: RR42_RS14925 - hypothetical protein, at 3,227,966 to 3,228,634 _RS14925 RR42_RS14930: RR42_RS14930 - biopolymer transporter ExbD, at 3,228,687 to 3,229,097 _RS14930 Position (kb) 3226 3227 3228Strain fitness (log2 ratio) -2 -1 0 1at 3225.471 kb on + strand, within RR42_RS14915at 3225.471 kb on + strand, within RR42_RS14915at 3225.471 kb on + strand, within RR42_RS14915at 3225.472 kb on - strand, within RR42_RS14915at 3225.723 kb on + strand, within RR42_RS14915at 3226.171 kb on + strandat 3226.172 kb on - strandat 3226.172 kb on - strandat 3226.243 kb on + strandat 3226.244 kb on - strandat 3226.327 kb on + strand, within RR42_RS14920at 3226.394 kb on + strand, within RR42_RS14920at 3226.394 kb on + strand, within RR42_RS14920at 3226.394 kb on + strand, within RR42_RS14920at 3226.395 kb on - strand, within RR42_RS14920at 3226.395 kb on - strand, within RR42_RS14920at 3226.396 kb on + strand, within RR42_RS14920at 3226.397 kb on - strand, within RR42_RS14920at 3226.397 kb on - strand, within RR42_RS14920at 3226.397 kb on - strand, within RR42_RS14920at 3226.455 kb on - strand, within RR42_RS14920at 3226.520 kb on - strand, within RR42_RS14920at 3226.615 kb on + strand, within RR42_RS14920at 3226.745 kb on - strand, within RR42_RS14920at 3226.792 kb on + strand, within RR42_RS14920at 3226.792 kb on + strand, within RR42_RS14920at 3226.792 kb on + strand, within RR42_RS14920at 3226.793 kb on - strand, within RR42_RS14920at 3226.796 kb on - strand, within RR42_RS14920at 3227.102 kb on - strand, within RR42_RS14920at 3227.398 kb on + strand, within RR42_RS14920at 3227.558 kb on + strand, within RR42_RS14920at 3227.559 kb on - strand, within RR42_RS14920at 3227.560 kb on + strand, within RR42_RS14920at 3227.907 kb on + strandat 3227.907 kb on + strandat 3228.220 kb on - strand, within RR42_RS14925at 3228.220 kb on - strand, within RR42_RS14925at 3228.220 kb on - strand, within RR42_RS14925at 3228.228 kb on + strand, within RR42_RS14925at 3228.476 kb on - strand, within RR42_RS14925at 3228.769 kb on + strand, within RR42_RS14930at 3228.769 kb on + strand, within RR42_RS14930at 3228.770 kb on - strand, within RR42_RS14930

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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3,225,471 + RR42_RS14915 0.17 +0.0
3,225,471 + RR42_RS14915 0.17 -2.6
3,225,471 + RR42_RS14915 0.17 -0.4
3,225,472 - RR42_RS14915 0.17 +0.8
3,225,723 + RR42_RS14915 0.50 +0.3
3,226,171 + +0.7
3,226,172 - -0.5
3,226,172 - -1.1
3,226,243 + +0.2
3,226,244 - +0.2
3,226,327 + RR42_RS14920 0.12 +1.6
3,226,394 + RR42_RS14920 0.16 -1.3
3,226,394 + RR42_RS14920 0.16 +1.0
3,226,394 + RR42_RS14920 0.16 -0.1
3,226,395 - RR42_RS14920 0.16 -0.4
3,226,395 - RR42_RS14920 0.16 +0.6
3,226,396 + RR42_RS14920 0.16 +0.1
3,226,397 - RR42_RS14920 0.16 +0.3
3,226,397 - RR42_RS14920 0.16 -0.4
3,226,397 - RR42_RS14920 0.16 +0.4
3,226,455 - RR42_RS14920 0.19 +0.7
3,226,520 - RR42_RS14920 0.23 -0.3
3,226,615 + RR42_RS14920 0.28 -1.9
3,226,745 - RR42_RS14920 0.35 -0.8
3,226,792 + RR42_RS14920 0.38 -0.2
3,226,792 + RR42_RS14920 0.38 +0.1
3,226,792 + RR42_RS14920 0.38 -2.5
3,226,793 - RR42_RS14920 0.38 -0.2
3,226,796 - RR42_RS14920 0.38 -0.9
3,227,102 - RR42_RS14920 0.56 -0.4
3,227,398 + RR42_RS14920 0.72 -0.6
3,227,558 + RR42_RS14920 0.81 -1.1
3,227,559 - RR42_RS14920 0.81 +1.3
3,227,560 + RR42_RS14920 0.81 -0.3
3,227,907 + +0.5
3,227,907 + -0.2
3,228,220 - RR42_RS14925 0.38 -0.7
3,228,220 - RR42_RS14925 0.38 +0.6
3,228,220 - RR42_RS14925 0.38 -0.5
3,228,228 + RR42_RS14925 0.39 -0.2
3,228,476 - RR42_RS14925 0.76 -0.1
3,228,769 + RR42_RS14930 0.20 +0.8
3,228,769 + RR42_RS14930 0.20 -1.0
3,228,770 - RR42_RS14930 0.20 +0.9

Or see this region's nucleotide sequence