Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04245 and RR42_RS04250 are separated by 26 nucleotides RR42_RS04250 and RR42_RS04255 are separated by 66 nucleotides RR42_RS04255 and RR42_RS04260 are separated by 87 nucleotides
RR42_RS04245: RR42_RS04245 - chemotaxis protein CheY, at 939,548 to 940,042
_RS04245
RR42_RS04250: RR42_RS04250 - chemotaxis protein CheY, at 940,069 to 940,437
_RS04250
RR42_RS04255: RR42_RS04255 - chemotaxis protein CheW, at 940,504 to 941,091
_RS04255
RR42_RS04260: RR42_RS04260 - chemotaxis protein, at 941,179 to 943,347
_RS04260
Position (kb) 940
941
942 Strain fitness (log2 ratio) -1
0
1 at 939.564 kb on + strand at 939.565 kb on - strand at 939.565 kb on - strand at 939.565 kb on - strand at 939.565 kb on - strand at 939.575 kb on - strand at 939.964 kb on + strand, within RR42_RS04245 at 939.965 kb on - strand, within RR42_RS04245 at 939.965 kb on - strand, within RR42_RS04245 at 939.991 kb on - strand, within RR42_RS04245 at 940.074 kb on + strand at 940.075 kb on - strand at 940.075 kb on - strand at 940.075 kb on - strand at 940.256 kb on - strand, within RR42_RS04250 at 940.376 kb on - strand, within RR42_RS04250 at 940.376 kb on - strand, within RR42_RS04250 at 940.376 kb on - strand, within RR42_RS04250 at 940.376 kb on - strand, within RR42_RS04250 at 940.555 kb on + strand at 940.555 kb on + strand at 940.723 kb on + strand, within RR42_RS04255 at 940.723 kb on + strand, within RR42_RS04255 at 941.178 kb on + strand at 941.179 kb on - strand at 941.179 kb on - strand at 941.387 kb on - strand at 941.387 kb on - strand at 941.926 kb on - strand, within RR42_RS04260 at 941.926 kb on - strand, within RR42_RS04260 at 941.926 kb on - strand, within RR42_RS04260 at 941.926 kb on - strand, within RR42_RS04260 at 941.926 kb on - strand, within RR42_RS04260
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 939,564 + -0.7 939,565 - +0.2 939,565 - +0.5 939,565 - -0.7 939,565 - -1.3 939,575 - -0.5 939,964 + RR42_RS04245 0.84 -0.4 939,965 - RR42_RS04245 0.84 -0.2 939,965 - RR42_RS04245 0.84 +0.7 939,991 - RR42_RS04245 0.89 -1.1 940,074 + -1.3 940,075 - -0.4 940,075 - +0.9 940,075 - -0.3 940,256 - RR42_RS04250 0.51 -0.2 940,376 - RR42_RS04250 0.83 -0.2 940,376 - RR42_RS04250 0.83 +0.7 940,376 - RR42_RS04250 0.83 -0.4 940,376 - RR42_RS04250 0.83 -0.9 940,555 + -1.4 940,555 + -0.7 940,723 + RR42_RS04255 0.37 -1.6 940,723 + RR42_RS04255 0.37 -0.7 941,178 + +1.1 941,179 - +0.6 941,179 - +0.2 941,387 - +0.1 941,387 - +0.8 941,926 - RR42_RS04260 0.34 -0.1 941,926 - RR42_RS04260 0.34 +0.5 941,926 - RR42_RS04260 0.34 -0.2 941,926 - RR42_RS04260 0.34 +0.2 941,926 - RR42_RS04260 0.34 +0.8
Or see this region's nucleotide sequence