Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03310 and RR42_RS03315 are separated by 9 nucleotides RR42_RS03315 and RR42_RS03320 are separated by 331 nucleotides
RR42_RS03310: RR42_RS03310 - multidrug transporter, at 734,788 to 737,961
_RS03310
RR42_RS03315: RR42_RS03315 - RND transporter MFP subunit, at 737,971 to 739,410
_RS03315
RR42_RS03320: RR42_RS03320 - transcriptional regulator, at 739,742 to 740,473
_RS03320
Position (kb) 737
738
739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 737.577 kb on - strand, within RR42_RS03310 at 738.169 kb on + strand, within RR42_RS03315 at 738.356 kb on + strand, within RR42_RS03315 at 738.356 kb on + strand, within RR42_RS03315 at 738.356 kb on + strand, within RR42_RS03315 at 738.357 kb on - strand, within RR42_RS03315 at 738.660 kb on - strand, within RR42_RS03315 at 738.660 kb on - strand, within RR42_RS03315 at 738.660 kb on - strand, within RR42_RS03315 at 738.660 kb on - strand, within RR42_RS03315 at 738.877 kb on + strand, within RR42_RS03315 at 739.159 kb on - strand, within RR42_RS03315 at 739.159 kb on - strand, within RR42_RS03315 at 739.275 kb on + strand at 739.286 kb on + strand at 739.286 kb on + strand at 739.286 kb on + strand at 739.286 kb on + strand at 739.287 kb on - strand at 739.287 kb on - strand at 739.467 kb on - strand at 739.481 kb on + strand at 739.481 kb on + strand at 739.482 kb on - strand at 739.482 kb on - strand at 739.482 kb on - strand at 739.482 kb on - strand at 739.489 kb on - strand at 739.601 kb on + strand at 739.601 kb on + strand at 739.602 kb on - strand at 739.612 kb on + strand at 739.612 kb on + strand at 739.612 kb on + strand at 739.613 kb on - strand at 739.613 kb on - strand at 739.668 kb on + strand at 739.686 kb on - strand at 739.726 kb on + strand at 739.727 kb on - strand at 739.730 kb on + strand at 739.730 kb on + strand at 739.730 kb on + strand at 739.730 kb on + strand at 739.731 kb on - strand at 739.731 kb on - strand at 739.741 kb on + strand at 739.742 kb on - strand at 740.051 kb on + strand, within RR42_RS03320 at 740.051 kb on + strand, within RR42_RS03320 at 740.052 kb on - strand, within RR42_RS03320 at 740.313 kb on - strand, within RR42_RS03320 at 740.313 kb on - strand, within RR42_RS03320 at 740.406 kb on - strand at 740.406 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 737,577 - RR42_RS03310 0.88 -0.4 738,169 + RR42_RS03315 0.14 +1.2 738,356 + RR42_RS03315 0.27 -0.9 738,356 + RR42_RS03315 0.27 -0.9 738,356 + RR42_RS03315 0.27 +0.2 738,357 - RR42_RS03315 0.27 -2.9 738,660 - RR42_RS03315 0.48 +0.6 738,660 - RR42_RS03315 0.48 -0.8 738,660 - RR42_RS03315 0.48 +0.4 738,660 - RR42_RS03315 0.48 -1.8 738,877 + RR42_RS03315 0.63 -0.5 739,159 - RR42_RS03315 0.82 -1.3 739,159 - RR42_RS03315 0.82 -1.1 739,275 + -2.0 739,286 + -0.5 739,286 + +1.2 739,286 + -2.3 739,286 + -0.0 739,287 - +2.2 739,287 - +0.2 739,467 - -1.3 739,481 + -2.5 739,481 + +0.6 739,482 - +0.4 739,482 - -2.6 739,482 - +0.4 739,482 - -3.1 739,489 - -0.9 739,601 + -1.1 739,601 + -0.8 739,602 - -0.5 739,612 + -1.1 739,612 + -0.8 739,612 + -1.8 739,613 - -2.4 739,613 - +0.4 739,668 + -0.7 739,686 - -0.3 739,726 + -0.1 739,727 - +0.1 739,730 + +1.5 739,730 + +0.0 739,730 + -0.9 739,730 + -0.3 739,731 - -0.7 739,731 - -0.2 739,741 + +0.1 739,742 - -1.5 740,051 + RR42_RS03320 0.42 -1.0 740,051 + RR42_RS03320 0.42 -0.4 740,052 - RR42_RS03320 0.42 -1.5 740,313 - RR42_RS03320 0.78 -0.2 740,313 - RR42_RS03320 0.78 -0.1 740,406 - -1.5 740,406 - -1.2
Or see this region's nucleotide sequence