Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03305 and RR42_RS03310 overlap by 1 nucleotides RR42_RS03310 and RR42_RS03315 are separated by 9 nucleotides
RR42_RS03305: RR42_RS03305 - acriflavin resistance protein, at 731,492 to 734,788
_RS03305
RR42_RS03310: RR42_RS03310 - multidrug transporter, at 734,788 to 737,961
_RS03310
RR42_RS03315: RR42_RS03315 - RND transporter MFP subunit, at 737,971 to 739,410
_RS03315
Position (kb) 734
735
736
737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 734.047 kb on - strand, within RR42_RS03305 at 734.067 kb on + strand, within RR42_RS03305 at 734.068 kb on - strand, within RR42_RS03305 at 734.068 kb on - strand, within RR42_RS03305 at 734.068 kb on - strand, within RR42_RS03305 at 734.325 kb on + strand, within RR42_RS03305 at 734.325 kb on + strand, within RR42_RS03305 at 734.326 kb on - strand, within RR42_RS03305 at 734.403 kb on + strand, within RR42_RS03305 at 734.933 kb on + strand at 734.933 kb on + strand at 735.335 kb on + strand, within RR42_RS03310 at 735.336 kb on - strand, within RR42_RS03310 at 735.356 kb on + strand, within RR42_RS03310 at 735.356 kb on + strand, within RR42_RS03310 at 735.357 kb on - strand, within RR42_RS03310 at 735.834 kb on - strand, within RR42_RS03310 at 735.834 kb on - strand, within RR42_RS03310 at 735.966 kb on - strand, within RR42_RS03310 at 736.018 kb on - strand, within RR42_RS03310 at 736.144 kb on - strand, within RR42_RS03310 at 736.144 kb on - strand, within RR42_RS03310 at 736.144 kb on - strand, within RR42_RS03310 at 736.328 kb on + strand, within RR42_RS03310 at 736.328 kb on + strand, within RR42_RS03310 at 736.328 kb on + strand, within RR42_RS03310 at 736.329 kb on - strand, within RR42_RS03310 at 736.329 kb on - strand, within RR42_RS03310 at 736.829 kb on + strand, within RR42_RS03310 at 736.829 kb on + strand, within RR42_RS03310 at 736.830 kb on - strand, within RR42_RS03310 at 736.830 kb on - strand, within RR42_RS03310 at 737.577 kb on - strand, within RR42_RS03310 at 738.169 kb on + strand, within RR42_RS03315 at 738.356 kb on + strand, within RR42_RS03315 at 738.356 kb on + strand, within RR42_RS03315 at 738.356 kb on + strand, within RR42_RS03315 at 738.357 kb on - strand, within RR42_RS03315 at 738.660 kb on - strand, within RR42_RS03315 at 738.660 kb on - strand, within RR42_RS03315 at 738.660 kb on - strand, within RR42_RS03315 at 738.660 kb on - strand, within RR42_RS03315 at 738.877 kb on + strand, within RR42_RS03315
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 734,047 - RR42_RS03305 0.77 -1.5 734,067 + RR42_RS03305 0.78 -0.3 734,068 - RR42_RS03305 0.78 +1.7 734,068 - RR42_RS03305 0.78 -0.7 734,068 - RR42_RS03305 0.78 -0.4 734,325 + RR42_RS03305 0.86 -0.1 734,325 + RR42_RS03305 0.86 -0.5 734,326 - RR42_RS03305 0.86 -0.0 734,403 + RR42_RS03305 0.88 -2.3 734,933 + -1.1 734,933 + -1.0 735,335 + RR42_RS03310 0.17 -1.3 735,336 - RR42_RS03310 0.17 -1.1 735,356 + RR42_RS03310 0.18 -1.4 735,356 + RR42_RS03310 0.18 +0.6 735,357 - RR42_RS03310 0.18 -1.5 735,834 - RR42_RS03310 0.33 -0.2 735,834 - RR42_RS03310 0.33 -0.7 735,966 - RR42_RS03310 0.37 -0.3 736,018 - RR42_RS03310 0.39 -0.5 736,144 - RR42_RS03310 0.43 -0.7 736,144 - RR42_RS03310 0.43 -1.6 736,144 - RR42_RS03310 0.43 -1.1 736,328 + RR42_RS03310 0.49 +0.1 736,328 + RR42_RS03310 0.49 -1.0 736,328 + RR42_RS03310 0.49 -0.7 736,329 - RR42_RS03310 0.49 -1.1 736,329 - RR42_RS03310 0.49 -0.9 736,829 + RR42_RS03310 0.64 +0.2 736,829 + RR42_RS03310 0.64 -0.8 736,830 - RR42_RS03310 0.64 +0.8 736,830 - RR42_RS03310 0.64 +0.3 737,577 - RR42_RS03310 0.88 -0.4 738,169 + RR42_RS03315 0.14 +1.2 738,356 + RR42_RS03315 0.27 -0.9 738,356 + RR42_RS03315 0.27 -0.9 738,356 + RR42_RS03315 0.27 +0.2 738,357 - RR42_RS03315 0.27 -2.9 738,660 - RR42_RS03315 0.48 +0.6 738,660 - RR42_RS03315 0.48 -0.8 738,660 - RR42_RS03315 0.48 +0.4 738,660 - RR42_RS03315 0.48 -1.8 738,877 + RR42_RS03315 0.63 -0.5
Or see this region's nucleotide sequence