Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03250 and RR42_RS03255 are separated by 39 nucleotides RR42_RS03255 and RR42_RS03260 overlap by 4 nucleotides RR42_RS03260 and RR42_RS03265 are separated by 161 nucleotides
RR42_RS03250: RR42_RS03250 - MarR family transcriptional regulator, at 720,856 to 721,416
_RS03250
RR42_RS03255: RR42_RS03255 - hypothetical protein, at 721,456 to 721,956
_RS03255
RR42_RS03260: RR42_RS03260 - branched-chain amino acid ABC transporter substrate-binding protein, at 721,953 to 723,071
_RS03260
RR42_RS03265: RR42_RS03265 - hypothetical protein, at 723,233 to 724,513
_RS03265
Position (kb) 721
722
723
724 Strain fitness (log2 ratio) -1
0
1 at 721.007 kb on + strand, within RR42_RS03250 at 721.218 kb on - strand, within RR42_RS03250 at 721.218 kb on - strand, within RR42_RS03250 at 721.221 kb on + strand, within RR42_RS03250 at 721.457 kb on + strand at 721.458 kb on - strand at 721.459 kb on + strand at 721.459 kb on + strand at 721.459 kb on + strand at 721.459 kb on + strand at 721.459 kb on + strand at 721.460 kb on - strand at 721.583 kb on + strand, within RR42_RS03255 at 721.583 kb on + strand, within RR42_RS03255 at 721.583 kb on + strand, within RR42_RS03255 at 721.670 kb on + strand, within RR42_RS03255 at 721.670 kb on + strand, within RR42_RS03255 at 721.670 kb on + strand, within RR42_RS03255 at 721.670 kb on + strand, within RR42_RS03255 at 721.671 kb on - strand, within RR42_RS03255 at 721.703 kb on + strand, within RR42_RS03255 at 721.703 kb on + strand, within RR42_RS03255 at 722.038 kb on + strand at 722.039 kb on - strand at 722.067 kb on - strand, within RR42_RS03260 at 722.067 kb on - strand, within RR42_RS03260 at 722.180 kb on - strand, within RR42_RS03260 at 722.180 kb on - strand, within RR42_RS03260 at 722.219 kb on - strand, within RR42_RS03260 at 722.242 kb on + strand, within RR42_RS03260 at 722.384 kb on - strand, within RR42_RS03260 at 722.528 kb on - strand, within RR42_RS03260 at 722.704 kb on + strand, within RR42_RS03260 at 722.705 kb on - strand, within RR42_RS03260 at 722.906 kb on + strand, within RR42_RS03260 at 722.907 kb on - strand, within RR42_RS03260 at 722.907 kb on - strand, within RR42_RS03260 at 722.907 kb on - strand, within RR42_RS03260 at 722.908 kb on + strand, within RR42_RS03260 at 723.195 kb on - strand at 723.195 kb on - strand at 723.234 kb on + strand at 723.285 kb on + strand at 723.286 kb on - strand at 723.463 kb on - strand, within RR42_RS03265 at 723.519 kb on + strand, within RR42_RS03265 at 723.520 kb on - strand, within RR42_RS03265 at 723.520 kb on - strand, within RR42_RS03265 at 723.599 kb on + strand, within RR42_RS03265 at 723.654 kb on + strand, within RR42_RS03265 at 723.654 kb on + strand, within RR42_RS03265 at 723.655 kb on - strand, within RR42_RS03265 at 723.655 kb on - strand, within RR42_RS03265 at 723.918 kb on + strand, within RR42_RS03265 at 723.918 kb on + strand, within RR42_RS03265 at 723.919 kb on - strand, within RR42_RS03265 at 723.988 kb on - strand, within RR42_RS03265
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 721,007 + RR42_RS03250 0.27 +0.3 721,218 - RR42_RS03250 0.65 -0.9 721,218 - RR42_RS03250 0.65 -0.4 721,221 + RR42_RS03250 0.65 -1.2 721,457 + -0.5 721,458 - +0.1 721,459 + -0.6 721,459 + -0.4 721,459 + +0.1 721,459 + +1.3 721,459 + -0.1 721,460 - -0.9 721,583 + RR42_RS03255 0.25 -0.2 721,583 + RR42_RS03255 0.25 +0.1 721,583 + RR42_RS03255 0.25 +0.5 721,670 + RR42_RS03255 0.43 -0.7 721,670 + RR42_RS03255 0.43 -0.1 721,670 + RR42_RS03255 0.43 -0.6 721,670 + RR42_RS03255 0.43 -0.2 721,671 - RR42_RS03255 0.43 -0.7 721,703 + RR42_RS03255 0.49 +0.2 721,703 + RR42_RS03255 0.49 -0.9 722,038 + +0.7 722,039 - -0.1 722,067 - RR42_RS03260 0.10 -1.4 722,067 - RR42_RS03260 0.10 +0.2 722,180 - RR42_RS03260 0.20 -0.6 722,180 - RR42_RS03260 0.20 -1.6 722,219 - RR42_RS03260 0.24 +0.1 722,242 + RR42_RS03260 0.26 -1.4 722,384 - RR42_RS03260 0.39 +0.2 722,528 - RR42_RS03260 0.51 +0.1 722,704 + RR42_RS03260 0.67 -1.0 722,705 - RR42_RS03260 0.67 +0.3 722,906 + RR42_RS03260 0.85 +0.4 722,907 - RR42_RS03260 0.85 -0.3 722,907 - RR42_RS03260 0.85 +1.2 722,907 - RR42_RS03260 0.85 -0.0 722,908 + RR42_RS03260 0.85 -0.8 723,195 - -1.0 723,195 - -0.8 723,234 + -0.4 723,285 + -0.4 723,286 - -1.6 723,463 - RR42_RS03265 0.18 -0.2 723,519 + RR42_RS03265 0.22 -1.4 723,520 - RR42_RS03265 0.22 -1.5 723,520 - RR42_RS03265 0.22 -0.8 723,599 + RR42_RS03265 0.29 -0.4 723,654 + RR42_RS03265 0.33 -1.0 723,654 + RR42_RS03265 0.33 -1.1 723,655 - RR42_RS03265 0.33 +0.0 723,655 - RR42_RS03265 0.33 -0.1 723,918 + RR42_RS03265 0.53 -0.4 723,918 + RR42_RS03265 0.53 -0.4 723,919 - RR42_RS03265 0.54 -0.1 723,988 - RR42_RS03265 0.59 +0.6
Or see this region's nucleotide sequence