Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02950 and RR42_RS02955 overlap by 4 nucleotides RR42_RS02955 and RR42_RS02960 overlap by 1 nucleotides RR42_RS02960 and RR42_RS02965 overlap by 1 nucleotides
RR42_RS02950: RR42_RS02950 - malonate decarboxylase subunit beta, at 656,002 to 656,853
_RS02950
RR42_RS02955: RR42_RS02955 - malonate decarboxylase subunit delta, at 656,850 to 657,164
_RS02955
RR42_RS02960: RR42_RS02960 - triphosphoribosyl-dephospho-CoA synthase, at 657,164 to 658,069
_RS02960
RR42_RS02965: RR42_RS02965 - malonate decarboxylase subunit alpha, at 658,069 to 659,727
_RS02965
Position (kb) 657
658
659 Strain fitness (log2 ratio) -1
0
1
2 at 656.186 kb on + strand, within RR42_RS02950 at 656.186 kb on + strand, within RR42_RS02950 at 656.264 kb on + strand, within RR42_RS02950 at 657.165 kb on + strand at 657.568 kb on - strand, within RR42_RS02960 at 657.568 kb on - strand, within RR42_RS02960 at 657.670 kb on + strand, within RR42_RS02960 at 657.671 kb on - strand, within RR42_RS02960 at 658.053 kb on - strand at 658.100 kb on + strand at 658.319 kb on + strand, within RR42_RS02965 at 658.358 kb on - strand, within RR42_RS02965 at 658.370 kb on + strand, within RR42_RS02965 at 658.371 kb on - strand, within RR42_RS02965 at 658.371 kb on - strand, within RR42_RS02965 at 658.769 kb on + strand, within RR42_RS02965 at 658.769 kb on + strand, within RR42_RS02965 at 658.769 kb on + strand, within RR42_RS02965 at 658.770 kb on - strand, within RR42_RS02965 at 658.770 kb on - strand, within RR42_RS02965 at 658.869 kb on - strand, within RR42_RS02965 at 658.941 kb on + strand, within RR42_RS02965 at 658.985 kb on + strand, within RR42_RS02965
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 656,186 + RR42_RS02950 0.22 +0.8 656,186 + RR42_RS02950 0.22 -1.3 656,264 + RR42_RS02950 0.31 +2.0 657,165 + -0.5 657,568 - RR42_RS02960 0.45 -0.3 657,568 - RR42_RS02960 0.45 -0.8 657,670 + RR42_RS02960 0.56 -0.6 657,671 - RR42_RS02960 0.56 -0.9 658,053 - -0.5 658,100 + +0.9 658,319 + RR42_RS02965 0.15 +0.2 658,358 - RR42_RS02965 0.17 -0.9 658,370 + RR42_RS02965 0.18 -0.4 658,371 - RR42_RS02965 0.18 +0.0 658,371 - RR42_RS02965 0.18 +0.3 658,769 + RR42_RS02965 0.42 +0.9 658,769 + RR42_RS02965 0.42 -0.5 658,769 + RR42_RS02965 0.42 -0.4 658,770 - RR42_RS02965 0.42 -1.3 658,770 - RR42_RS02965 0.42 -0.2 658,869 - RR42_RS02965 0.48 -1.6 658,941 + RR42_RS02965 0.53 -1.3 658,985 + RR42_RS02965 0.55 -0.3
Or see this region's nucleotide sequence