Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01700 and RR42_RS01705 are separated by 8 nucleotides RR42_RS01705 and RR42_RS01710 are separated by 141 nucleotides
RR42_RS01700: RR42_RS01700 - ATPase, at 386,509 to 388,494
_RS01700
RR42_RS01705: RR42_RS01705 - Fis family transcriptional regulator, at 388,503 to 389,819
_RS01705
RR42_RS01710: RR42_RS01710 - tyrosine ammonia-lyase, at 389,961 to 391,559
_RS01710
Position (kb) 388
389
390 Strain fitness (log2 ratio) -2
-1
0
1 at 387.520 kb on + strand, within RR42_RS01700 at 388.419 kb on - strand at 388.419 kb on - strand at 388.549 kb on + strand at 388.550 kb on - strand at 388.778 kb on - strand, within RR42_RS01705 at 388.801 kb on - strand, within RR42_RS01705 at 389.409 kb on + strand, within RR42_RS01705 at 389.409 kb on + strand, within RR42_RS01705 at 389.697 kb on + strand at 389.697 kb on + strand at 389.721 kb on - strand at 389.721 kb on - strand at 389.790 kb on + strand at 389.887 kb on + strand at 389.936 kb on - strand at 390.126 kb on + strand, within RR42_RS01710 at 390.126 kb on + strand, within RR42_RS01710 at 390.126 kb on + strand, within RR42_RS01710 at 390.127 kb on - strand, within RR42_RS01710 at 390.127 kb on - strand, within RR42_RS01710 at 390.127 kb on - strand, within RR42_RS01710 at 390.161 kb on + strand, within RR42_RS01710 at 390.161 kb on + strand, within RR42_RS01710 at 390.162 kb on - strand, within RR42_RS01710 at 390.162 kb on - strand, within RR42_RS01710 at 390.162 kb on - strand, within RR42_RS01710 at 390.342 kb on + strand, within RR42_RS01710 at 390.493 kb on + strand, within RR42_RS01710 at 390.494 kb on - strand, within RR42_RS01710 at 390.494 kb on - strand, within RR42_RS01710 at 390.538 kb on + strand, within RR42_RS01710
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 387,520 + RR42_RS01700 0.51 +1.0 388,419 - -0.6 388,419 - +0.2 388,549 + +0.3 388,550 - -0.1 388,778 - RR42_RS01705 0.21 -0.6 388,801 - RR42_RS01705 0.23 -0.5 389,409 + RR42_RS01705 0.69 -0.3 389,409 + RR42_RS01705 0.69 -1.9 389,697 + +0.7 389,697 + -0.2 389,721 - +0.0 389,721 - -0.2 389,790 + -1.0 389,887 + -0.3 389,936 - +0.1 390,126 + RR42_RS01710 0.10 -2.4 390,126 + RR42_RS01710 0.10 -0.4 390,126 + RR42_RS01710 0.10 +0.6 390,127 - RR42_RS01710 0.10 +0.8 390,127 - RR42_RS01710 0.10 +0.3 390,127 - RR42_RS01710 0.10 -0.4 390,161 + RR42_RS01710 0.13 -0.9 390,161 + RR42_RS01710 0.13 -0.4 390,162 - RR42_RS01710 0.13 -0.1 390,162 - RR42_RS01710 0.13 -0.5 390,162 - RR42_RS01710 0.13 -0.2 390,342 + RR42_RS01710 0.24 +0.8 390,493 + RR42_RS01710 0.33 +0.4 390,494 - RR42_RS01710 0.33 +0.4 390,494 - RR42_RS01710 0.33 +0.5 390,538 + RR42_RS01710 0.36 -0.3
Or see this region's nucleotide sequence