Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00535

Experiment: R2A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A
138,398	+				-0.0
138,446	+				+0.0
138,447	-				-0.2
138,447	-				-1.9
138,454	+				+0.1
138,454	+				-0.2
138,454	+				-0.5
138,455	-				-0.2
138,743	-		RR42_RS00530	0.28	-1.2
138,748	+		RR42_RS00530	0.29	-0.8
138,748	+		RR42_RS00530	0.29	-1.2
138,748	+		RR42_RS00530	0.29	-2.7
138,749	-		RR42_RS00530	0.29	+0.4
138,749	-		RR42_RS00530	0.29	-0.2
138,749	-		RR42_RS00530	0.29	-1.0
138,749	-		RR42_RS00530	0.29	-0.2
138,749	-		RR42_RS00530	0.29	-0.2
138,835	-		RR42_RS00530	0.42	+0.4
138,835	-		RR42_RS00530	0.42	-0.4
138,835	-		RR42_RS00530	0.42	-1.8
138,868	+		RR42_RS00530	0.46	-0.7
138,868	+		RR42_RS00530	0.46	-0.9
138,868	+		RR42_RS00530	0.46	-0.4
138,868	+		RR42_RS00530	0.46	+0.4
138,868	+		RR42_RS00530	0.46	-0.8
138,868	+		RR42_RS00530	0.46	-1.0
138,976	+		RR42_RS00530	0.62	-1.7
138,976	+		RR42_RS00530	0.62	-0.7
138,977	-		RR42_RS00530	0.62	-0.1
138,977	-		RR42_RS00530	0.62	-0.3
139,007	-		RR42_RS00530	0.66	-0.3
139,028	-		RR42_RS00530	0.69	-0.6
139,030	-		RR42_RS00530	0.70	-0.5
139,030	-		RR42_RS00530	0.70	-0.7
139,066	+		RR42_RS00530	0.75	-0.0
139,066	+		RR42_RS00530	0.75	-0.3
139,066	+		RR42_RS00530	0.75	-1.0
139,066	+		RR42_RS00530	0.75	-2.0
139,067	-		RR42_RS00530	0.75	+0.4
139,067	-		RR42_RS00530	0.75	-0.3
139,067	-		RR42_RS00530	0.75	-1.1
139,067	-		RR42_RS00530	0.75	-0.3
139,081	+		RR42_RS00530	0.77	-0.6
139,082	-		RR42_RS00530	0.77	-0.0
139,084	+		RR42_RS00530	0.77	+0.4
139,084	+		RR42_RS00530	0.77	-0.3
139,085	-		RR42_RS00530	0.78	-0.9
139,085	-		RR42_RS00530	0.78	-2.0
139,085	-		RR42_RS00530	0.78	-0.8
139,141	+		RR42_RS00530	0.86	+0.4
139,237	+				+0.6
139,237	+				-0.4
139,237	+				-0.4
139,237	+				-0.6
139,237	+				-0.9
139,237	+				+0.2
139,237	+				-0.1
139,238	-				-0.0
139,238	-				-1.6
139,238	-				+0.9
139,238	-				-0.2
139,238	-				-1.1
139,249	-				+0.1
139,318	+				-1.0
139,318	+				-0.5
139,318	+				-1.0
139,370	-				-0.2
139,413	+				-0.5
139,414	-				+0.1
139,492	-				-0.9
139,554	+				+0.6
139,554	+				-0.2
139,554	+				+0.1
139,555	-				-0.6
139,555	-				+0.3
139,632	+				-0.4
139,632	+				-1.2
139,633	-				-1.4
139,633	-				-0.3
139,662	+				-0.4
139,686	+				+0.2
139,686	+				+0.6
139,686	+				-1.0
139,686	+				-0.7
139,687	-				-0.6
139,687	-				-0.6
139,720	-				-0.2
139,720	-				-1.2
139,720	-				+1.9
139,720	-				-0.3
139,720	-				-0.5
139,721	+				-1.5
139,721	+				-2.9
139,721	+				+0.3
139,721	+				+0.8
139,721	+				-0.7
139,722	-				-0.7
139,722	-				-1.1
139,722	-				-1.6
139,722	-				-0.2
139,980	+		RR42_RS00535	0.17	-0.9
140,073	+		RR42_RS00535	0.20	-1.1
140,074	-		RR42_RS00535	0.20	-0.8
140,138	+		RR42_RS00535	0.22	-1.4
140,244	+		RR42_RS00535	0.25	-1.9
140,245	-		RR42_RS00535	0.25	-0.4
140,271	+		RR42_RS00535	0.25	-0.5
140,271	+		RR42_RS00535	0.25	-0.8
140,272	-		RR42_RS00535	0.25	-0.8
140,272	-		RR42_RS00535	0.25	-0.3
140,273	+		RR42_RS00535	0.25	-0.6
140,274	-		RR42_RS00535	0.25	-0.8
140,274	-		RR42_RS00535	0.25	-1.9
140,442	+		RR42_RS00535	0.30	-0.1
140,443	-		RR42_RS00535	0.30	-1.6
140,443	-		RR42_RS00535	0.30	+0.2
140,462	+		RR42_RS00535	0.31	+0.2
140,462	+		RR42_RS00535	0.31	+0.4
140,462	+		RR42_RS00535	0.31	-0.2
140,631	+		RR42_RS00535	0.36	-0.6
140,631	+		RR42_RS00535	0.36	+0.5
140,631	+		RR42_RS00535	0.36	+1.2
140,632	-		RR42_RS00535	0.36	-0.2
140,632	-		RR42_RS00535	0.36	-1.5
140,634	-		RR42_RS00535	0.36	-1.5
140,664	-		RR42_RS00535	0.36	-1.2
140,727	+		RR42_RS00535	0.38	-0.2
140,727	+		RR42_RS00535	0.38	-0.1
140,727	+		RR42_RS00535	0.38	-1.0
140,728	-		RR42_RS00535	0.38	-0.6
140,730	+		RR42_RS00535	0.38	-2.5
140,730	+		RR42_RS00535	0.38	-1.8
140,731	-		RR42_RS00535	0.38	-0.6
140,731	-		RR42_RS00535	0.38	-0.3
140,952	+		RR42_RS00535	0.45	-3.0
140,952	+		RR42_RS00535	0.45	-0.1
140,953	-		RR42_RS00535	0.45	-1.1
141,171	+		RR42_RS00535	0.51	-2.1
141,420	+		RR42_RS00535	0.58	-0.7
141,420	+		RR42_RS00535	0.58	-1.3
141,420	+		RR42_RS00535	0.58	+0.1
141,420	+		RR42_RS00535	0.58	-0.6
141,421	-		RR42_RS00535	0.58	+0.2
141,421	-		RR42_RS00535	0.58	-1.6
141,456	+		RR42_RS00535	0.59	-0.4
141,456	+		RR42_RS00535	0.59	-0.1
141,457	-		RR42_RS00535	0.59	-1.1
141,457	-		RR42_RS00535	0.59	+0.8
141,636	-		RR42_RS00535	0.64	-3.6
141,669	+		RR42_RS00535	0.65	+0.2
141,807	+		RR42_RS00535	0.69	-0.8
141,808	-		RR42_RS00535	0.69	-0.9
141,834	+		RR42_RS00535	0.70	-0.3
141,835	-		RR42_RS00535	0.70	-2.8
141,909	+		RR42_RS00535	0.72	-0.4
141,910	-		RR42_RS00535	0.72	+0.9
141,910	-		RR42_RS00535	0.72	+0.1
142,026	-		RR42_RS00535	0.75	-0.4
142,219	-		RR42_RS00535	0.80	-1.0
142,486	-		RR42_RS00535	0.88	-0.3
142,624	-				-1.1
142,734	+				-1.6
142,735	-				-0.6
142,735	-				+0.4
142,760	+				+1.4
142,760	+				-0.6
142,761	-				-1.0
142,764	+				-1.3
142,764	+				-0.5
142,764	+				-0.8
142,764	+				-1.0
142,764	+				+0.5
142,764	+				+0.6
142,764	+				-2.8
142,765	-				-0.1
142,765	-				+0.1
142,788	+				-1.7
143,091	+				-0.6
143,092	-				+0.2
143,171	+				+0.7
143,171	+				-0.2
143,172	-				-0.8
143,172	-				-0.5
143,172	-				-0.5
143,324	+		RR42_RS00540	0.14	-1.7
143,324	+		RR42_RS00540	0.14	+0.2
143,324	+		RR42_RS00540	0.14	+0.0
143,325	-		RR42_RS00540	0.15	-0.1
143,325	-		RR42_RS00540	0.15	-0.8
143,412	-		RR42_RS00540	0.18	-0.6
143,412	-		RR42_RS00540	0.18	+0.8
143,464	+		RR42_RS00540	0.20	-1.4
143,464	+		RR42_RS00540	0.20	-0.1
143,465	-		RR42_RS00540	0.20	-0.8
143,465	-		RR42_RS00540	0.20	+1.0
143,465	-		RR42_RS00540	0.20	-1.3
143,525	+		RR42_RS00540	0.22	-3.0
143,729	+		RR42_RS00540	0.30	+1.4
143,730	-		RR42_RS00540	0.30	+1.4
143,732	-		RR42_RS00540	0.30	-1.2
143,741	+		RR42_RS00540	0.30	+0.1
143,742	-		RR42_RS00540	0.30	-2.5
143,825	+		RR42_RS00540	0.33	+1.4
143,825	+		RR42_RS00540	0.33	+0.4
143,825	+		RR42_RS00540	0.33	-0.1
143,826	-		RR42_RS00540	0.33	-0.9
143,826	-		RR42_RS00540	0.33	-1.8
143,889	-		RR42_RS00540	0.36	+1.0
143,889	-		RR42_RS00540	0.36	-0.9