Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00515 and RR42_RS00520 are separated by 142 nucleotides RR42_RS00520 and RR42_RS00525 are separated by 353 nucleotides
RR42_RS00515: RR42_RS00515 - phosphonate monoester hydrolase, at 134,882 to 136,441
_RS00515
RR42_RS00520: RR42_RS00520 - ABC transporter substrate-binding protein, at 136,584 to 137,531
_RS00520
RR42_RS00525: RR42_RS00525 - MarR family transcriptional regulator, at 137,885 to 138,400
_RS00525
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1 at 135.723 kb on + strand, within RR42_RS00515 at 135.735 kb on + strand, within RR42_RS00515 at 135.751 kb on + strand, within RR42_RS00515 at 135.752 kb on - strand, within RR42_RS00515 at 135.753 kb on + strand, within RR42_RS00515 at 135.753 kb on + strand, within RR42_RS00515 at 135.753 kb on + strand, within RR42_RS00515 at 135.753 kb on + strand, within RR42_RS00515 at 135.753 kb on + strand, within RR42_RS00515 at 135.754 kb on - strand, within RR42_RS00515 at 135.819 kb on + strand, within RR42_RS00515 at 135.819 kb on + strand, within RR42_RS00515 at 135.820 kb on - strand, within RR42_RS00515 at 135.820 kb on - strand, within RR42_RS00515 at 135.820 kb on - strand, within RR42_RS00515 at 135.820 kb on - strand, within RR42_RS00515 at 135.836 kb on + strand, within RR42_RS00515 at 135.841 kb on + strand, within RR42_RS00515 at 135.841 kb on + strand, within RR42_RS00515 at 135.841 kb on + strand, within RR42_RS00515 at 135.842 kb on - strand, within RR42_RS00515 at 135.842 kb on - strand, within RR42_RS00515 at 135.842 kb on - strand, within RR42_RS00515 at 135.842 kb on - strand, within RR42_RS00515 at 135.842 kb on - strand, within RR42_RS00515 at 135.842 kb on - strand, within RR42_RS00515 at 135.842 kb on - strand, within RR42_RS00515 at 135.842 kb on - strand, within RR42_RS00515 at 135.842 kb on - strand, within RR42_RS00515 at 135.844 kb on - strand, within RR42_RS00515 at 135.949 kb on - strand, within RR42_RS00515 at 135.975 kb on + strand, within RR42_RS00515 at 136.182 kb on + strand, within RR42_RS00515 at 136.263 kb on + strand, within RR42_RS00515 at 136.263 kb on + strand, within RR42_RS00515 at 136.263 kb on + strand, within RR42_RS00515 at 136.264 kb on - strand, within RR42_RS00515 at 136.264 kb on - strand, within RR42_RS00515 at 136.264 kb on - strand, within RR42_RS00515 at 136.378 kb on - strand at 136.378 kb on - strand at 136.828 kb on + strand, within RR42_RS00520 at 137.076 kb on + strand, within RR42_RS00520 at 137.092 kb on + strand, within RR42_RS00520 at 137.134 kb on + strand, within RR42_RS00520 at 137.134 kb on + strand, within RR42_RS00520 at 137.135 kb on - strand, within RR42_RS00520 at 137.135 kb on - strand, within RR42_RS00520 at 137.135 kb on - strand, within RR42_RS00520 at 137.233 kb on + strand, within RR42_RS00520 at 137.233 kb on + strand, within RR42_RS00520 at 137.233 kb on + strand, within RR42_RS00520 at 137.248 kb on + strand, within RR42_RS00520 at 137.248 kb on + strand, within RR42_RS00520 at 137.248 kb on + strand, within RR42_RS00520 at 137.248 kb on + strand, within RR42_RS00520 at 137.327 kb on - strand, within RR42_RS00520 at 137.327 kb on - strand, within RR42_RS00520 at 137.327 kb on - strand at 137.550 kb on + strand at 137.623 kb on + strand at 137.623 kb on + strand at 137.624 kb on - strand at 137.781 kb on + strand at 137.782 kb on - strand at 137.922 kb on - strand at 137.930 kb on + strand at 137.931 kb on - strand at 137.931 kb on - strand at 138.200 kb on + strand, within RR42_RS00525 at 138.200 kb on + strand, within RR42_RS00525 at 138.398 kb on + strand at 138.446 kb on + strand at 138.447 kb on - strand at 138.447 kb on - strand at 138.454 kb on + strand at 138.454 kb on + strand at 138.454 kb on + strand at 138.455 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 135,723 + RR42_RS00515 0.54 +0.6 135,735 + RR42_RS00515 0.55 +0.5 135,751 + RR42_RS00515 0.56 -1.7 135,752 - RR42_RS00515 0.56 -0.2 135,753 + RR42_RS00515 0.56 -0.1 135,753 + RR42_RS00515 0.56 -1.7 135,753 + RR42_RS00515 0.56 +0.0 135,753 + RR42_RS00515 0.56 -1.0 135,753 + RR42_RS00515 0.56 -0.0 135,754 - RR42_RS00515 0.56 -2.1 135,819 + RR42_RS00515 0.60 -0.3 135,819 + RR42_RS00515 0.60 -1.7 135,820 - RR42_RS00515 0.60 -0.5 135,820 - RR42_RS00515 0.60 -0.5 135,820 - RR42_RS00515 0.60 -0.7 135,820 - RR42_RS00515 0.60 +0.1 135,836 + RR42_RS00515 0.61 -1.0 135,841 + RR42_RS00515 0.61 +0.7 135,841 + RR42_RS00515 0.61 -1.2 135,841 + RR42_RS00515 0.61 -0.3 135,842 - RR42_RS00515 0.62 +0.4 135,842 - RR42_RS00515 0.62 -2.0 135,842 - RR42_RS00515 0.62 -0.2 135,842 - RR42_RS00515 0.62 -1.8 135,842 - RR42_RS00515 0.62 -0.8 135,842 - RR42_RS00515 0.62 -1.0 135,842 - RR42_RS00515 0.62 -0.6 135,842 - RR42_RS00515 0.62 +0.1 135,842 - RR42_RS00515 0.62 -1.2 135,844 - RR42_RS00515 0.62 +0.8 135,949 - RR42_RS00515 0.68 -0.0 135,975 + RR42_RS00515 0.70 +0.3 136,182 + RR42_RS00515 0.83 -0.2 136,263 + RR42_RS00515 0.89 +0.0 136,263 + RR42_RS00515 0.89 -0.5 136,263 + RR42_RS00515 0.89 -0.4 136,264 - RR42_RS00515 0.89 -0.5 136,264 - RR42_RS00515 0.89 +0.5 136,264 - RR42_RS00515 0.89 -0.6 136,378 - +0.4 136,378 - -0.2 136,828 + RR42_RS00520 0.26 -2.2 137,076 + RR42_RS00520 0.52 -0.2 137,092 + RR42_RS00520 0.54 +0.4 137,134 + RR42_RS00520 0.58 -2.1 137,134 + RR42_RS00520 0.58 -0.3 137,135 - RR42_RS00520 0.58 -0.9 137,135 - RR42_RS00520 0.58 -2.2 137,135 - RR42_RS00520 0.58 +0.0 137,233 + RR42_RS00520 0.68 -2.3 137,233 + RR42_RS00520 0.68 +1.4 137,233 + RR42_RS00520 0.68 -0.2 137,248 + RR42_RS00520 0.70 -0.8 137,248 + RR42_RS00520 0.70 -0.2 137,248 + RR42_RS00520 0.70 -0.6 137,248 + RR42_RS00520 0.70 +1.4 137,327 - RR42_RS00520 0.78 -0.3 137,327 - RR42_RS00520 0.78 +0.9 137,327 - +0.4 137,550 + -0.4 137,623 + +0.2 137,623 + -0.0 137,624 - -1.4 137,781 + -0.6 137,782 - -1.3 137,922 - -0.4 137,930 + -0.5 137,931 - -1.2 137,931 - -0.4 138,200 + RR42_RS00525 0.61 -0.8 138,200 + RR42_RS00525 0.61 -0.4 138,398 + -0.0 138,446 + +0.0 138,447 - -0.2 138,447 - -1.9 138,454 + +0.1 138,454 + -0.2 138,454 + -0.5 138,455 - -0.2
Or see this region's nucleotide sequence