Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00485 and RR42_RS00490 are separated by 57 nucleotides RR42_RS00490 and RR42_RS00495 are separated by 332 nucleotides
RR42_RS00485: RR42_RS00485 - potassium-transporting ATPase subunit B, at 124,899 to 127,124
_RS00485
RR42_RS00490: RR42_RS00490 - potassium-transporting ATPase subunit C, at 127,182 to 127,799
_RS00490
RR42_RS00495: RR42_RS00495 - histidine kinase, at 128,132 to 131,065
_RS00495
Position (kb) 127
128 Strain fitness (log2 ratio) -1
0
1 at 126.835 kb on - strand, within RR42_RS00485 at 126.870 kb on + strand, within RR42_RS00485 at 126.923 kb on + strand at 126.929 kb on - strand at 127.044 kb on + strand at 127.045 kb on - strand at 127.167 kb on + strand at 127.167 kb on + strand at 127.187 kb on + strand at 127.188 kb on - strand at 127.417 kb on - strand, within RR42_RS00490 at 127.417 kb on - strand, within RR42_RS00490 at 127.455 kb on + strand, within RR42_RS00490 at 127.456 kb on - strand, within RR42_RS00490 at 127.456 kb on - strand, within RR42_RS00490 at 127.825 kb on + strand at 127.940 kb on - strand at 128.078 kb on + strand at 128.079 kb on - strand at 128.240 kb on + strand at 128.240 kb on + strand at 128.757 kb on - strand, within RR42_RS00495 at 128.757 kb on - strand, within RR42_RS00495
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 126,835 - RR42_RS00485 0.87 -0.2 126,870 + RR42_RS00485 0.89 -0.4 126,923 + +0.2 126,929 - +0.4 127,044 + -0.9 127,045 - +1.4 127,167 + -0.6 127,167 + -0.3 127,187 + -0.4 127,188 - -0.8 127,417 - RR42_RS00490 0.38 -0.1 127,417 - RR42_RS00490 0.38 +0.6 127,455 + RR42_RS00490 0.44 +0.2 127,456 - RR42_RS00490 0.44 +0.2 127,456 - RR42_RS00490 0.44 +0.8 127,825 + -1.0 127,940 - -0.7 128,078 + -0.8 128,079 - -0.9 128,240 + -1.3 128,240 + -0.7 128,757 - RR42_RS00495 0.21 +0.2 128,757 - RR42_RS00495 0.21 -1.1
Or see this region's nucleotide sequence