Experiment: LB no stress 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_252 and Pf6N2E2_253 are separated by 360 nucleotides Pf6N2E2_253 and Pf6N2E2_254 are separated by 146 nucleotides
Pf6N2E2_252 - Disease resistance protein / Tetratricopeptide repeat-containing protein, at 314,129 to 316,918
_252
Pf6N2E2_253 - Non-heme chloroperoxidase (EC 1.11.1.10), at 317,279 to 318,100
_253
Pf6N2E2_254 - Transcriptional regulator, LysR family, at 318,247 to 319,194
_254
Position (kb) 317
318
319 Strain fitness (log2 ratio) -2
-1
0
1 at 316.447 kb on + strand, within Pf6N2E2_252 at 316.635 kb on + strand, within Pf6N2E2_252 at 316.635 kb on + strand, within Pf6N2E2_252 at 316.635 kb on + strand, within Pf6N2E2_252 at 316.635 kb on + strand, within Pf6N2E2_252 at 316.702 kb on + strand at 316.909 kb on - strand at 316.909 kb on - strand at 316.909 kb on - strand at 316.964 kb on + strand at 316.964 kb on + strand at 317.013 kb on + strand at 317.013 kb on + strand at 317.014 kb on - strand at 317.122 kb on + strand at 317.123 kb on - strand at 317.214 kb on - strand at 317.247 kb on - strand at 317.294 kb on - strand at 317.315 kb on + strand at 317.315 kb on + strand at 317.315 kb on + strand at 317.316 kb on - strand at 317.316 kb on - strand at 317.316 kb on - strand at 317.316 kb on - strand at 317.318 kb on + strand at 317.318 kb on + strand at 317.319 kb on - strand at 317.742 kb on + strand, within Pf6N2E2_253 at 317.743 kb on - strand, within Pf6N2E2_253 at 317.744 kb on + strand, within Pf6N2E2_253 at 317.744 kb on + strand, within Pf6N2E2_253 at 317.744 kb on + strand, within Pf6N2E2_253 at 317.744 kb on + strand, within Pf6N2E2_253 at 317.745 kb on - strand, within Pf6N2E2_253 at 317.745 kb on - strand, within Pf6N2E2_253 at 317.745 kb on - strand, within Pf6N2E2_253 at 317.745 kb on - strand, within Pf6N2E2_253 at 317.745 kb on - strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.931 kb on + strand, within Pf6N2E2_253 at 318.107 kb on + strand at 318.107 kb on + strand at 318.107 kb on + strand at 318.108 kb on - strand at 318.712 kb on + strand, within Pf6N2E2_254 at 318.712 kb on + strand, within Pf6N2E2_254 at 318.817 kb on + strand, within Pf6N2E2_254 at 318.818 kb on - strand, within Pf6N2E2_254 at 318.818 kb on - strand, within Pf6N2E2_254 at 318.818 kb on - strand, within Pf6N2E2_254 at 318.818 kb on - strand, within Pf6N2E2_254 at 318.988 kb on + strand, within Pf6N2E2_254
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress 24 hours remove 316,447 + Pf6N2E2_252 0.83 -0.2 316,635 + Pf6N2E2_252 0.90 +0.3 316,635 + Pf6N2E2_252 0.90 +0.3 316,635 + Pf6N2E2_252 0.90 +0.1 316,635 + Pf6N2E2_252 0.90 +1.7 316,702 + -0.2 316,909 - -1.2 316,909 - +0.1 316,909 - +0.0 316,964 + -0.3 316,964 + -0.7 317,013 + +0.9 317,013 + -0.9 317,014 - +0.0 317,122 + -0.0 317,123 - +0.2 317,214 - -1.4 317,247 - -0.6 317,294 - -0.1 317,315 + +0.8 317,315 + +0.5 317,315 + +0.0 317,316 - -0.2 317,316 - -0.9 317,316 - -0.1 317,316 - +1.5 317,318 + -0.0 317,318 + +0.3 317,319 - +0.3 317,742 + Pf6N2E2_253 0.56 +0.4 317,743 - Pf6N2E2_253 0.56 +0.3 317,744 + Pf6N2E2_253 0.57 -1.0 317,744 + Pf6N2E2_253 0.57 -0.8 317,744 + Pf6N2E2_253 0.57 -1.1 317,744 + Pf6N2E2_253 0.57 +0.1 317,745 - Pf6N2E2_253 0.57 -1.3 317,745 - Pf6N2E2_253 0.57 -0.3 317,745 - Pf6N2E2_253 0.57 +0.5 317,745 - Pf6N2E2_253 0.57 +0.8 317,745 - Pf6N2E2_253 0.57 -0.2 317,858 + Pf6N2E2_253 0.70 +0.9 317,858 + Pf6N2E2_253 0.70 +0.8 317,858 + Pf6N2E2_253 0.70 -0.3 317,858 + Pf6N2E2_253 0.70 +0.3 317,858 + Pf6N2E2_253 0.70 -0.6 317,858 + Pf6N2E2_253 0.70 +0.7 317,858 + Pf6N2E2_253 0.70 +0.2 317,858 + Pf6N2E2_253 0.70 -1.0 317,858 + Pf6N2E2_253 0.70 -1.8 317,858 + Pf6N2E2_253 0.70 -1.1 317,859 - Pf6N2E2_253 0.71 -0.8 317,859 - Pf6N2E2_253 0.71 +0.6 317,859 - Pf6N2E2_253 0.71 +0.3 317,859 - Pf6N2E2_253 0.71 -0.9 317,859 - Pf6N2E2_253 0.71 +0.3 317,859 - Pf6N2E2_253 0.71 -0.4 317,859 - Pf6N2E2_253 0.71 -0.7 317,859 - Pf6N2E2_253 0.71 +0.4 317,931 + Pf6N2E2_253 0.79 -0.5 318,107 + -0.0 318,107 + -0.5 318,107 + -1.2 318,108 - +0.4 318,712 + Pf6N2E2_254 0.49 -1.0 318,712 + Pf6N2E2_254 0.49 +1.3 318,817 + Pf6N2E2_254 0.60 +0.4 318,818 - Pf6N2E2_254 0.60 +1.5 318,818 - Pf6N2E2_254 0.60 +0.5 318,818 - Pf6N2E2_254 0.60 -2.1 318,818 - Pf6N2E2_254 0.60 -0.7 318,988 + Pf6N2E2_254 0.78 -0.9
Or see this region's nucleotide sequence