Strain Fitness in Dechlorosoma suillum PS around Dsui_3459

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3458 and Dsui_3459 are separated by 46 nucleotidesDsui_3459 and Dsui_3460 are separated by 1 nucleotidesDsui_3460 and Dsui_3461 are separated by 150 nucleotides Dsui_3458: Dsui_3458 - septum site-determining protein MinC, at 3,721,228 to 3,722,064 _3458 Dsui_3459: Dsui_3459 - septum site-determining protein MinD, at 3,722,111 to 3,722,923 _3459 Dsui_3460: Dsui_3460 - cell division topological specificity factor MinE, at 3,722,925 to 3,723,191 _3460 Dsui_3461: Dsui_3461 - hypothetical protein, at 3,723,342 to 3,724,892 _3461 Position (kb) 3722 3723Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3721.173 kb on + strandat 3721.181 kb on - strandat 3721.233 kb on - strandat 3721.502 kb on - strand, within Dsui_3458at 3721.636 kb on + strand, within Dsui_3458at 3721.770 kb on + strand, within Dsui_3458at 3721.827 kb on + strand, within Dsui_3458at 3721.874 kb on - strandat 3721.967 kb on + strand, within Dsui_3458at 3722.050 kb on + strandat 3722.057 kb on - strandat 3722.057 kb on - strandat 3722.083 kb on + strandat 3722.083 kb on + strandat 3722.083 kb on + strandat 3722.083 kb on + strandat 3722.091 kb on - strandat 3722.091 kb on - strandat 3722.184 kb on + strandat 3722.186 kb on - strandat 3722.192 kb on - strandat 3722.241 kb on + strand, within Dsui_3459at 3722.241 kb on + strand, within Dsui_3459at 3722.249 kb on - strandat 3722.346 kb on + strand, within Dsui_3459at 3722.444 kb on + strand, within Dsui_3459at 3722.590 kb on + strand, within Dsui_3459at 3722.649 kb on + strand, within Dsui_3459at 3722.649 kb on - strandat 3722.691 kb on + strand, within Dsui_3459at 3722.766 kb on + strand, within Dsui_3459at 3722.861 kb on + strandat 3723.247 kb on + strandat 3723.459 kb on - strandat 3723.759 kb on + strandat 3723.831 kb on + strand, within Dsui_3461at 3723.884 kb on + strand, within Dsui_3461at 3723.908 kb on + strandat 3723.913 kb on + strandat 3723.921 kb on - strand, within Dsui_3461

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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3,721,173 + -1.9
3,721,181 - -1.1
3,721,233 - -2.6
3,721,502 - Dsui_3458 0.33 -0.3
3,721,636 + Dsui_3458 0.49 -2.7
3,721,770 + Dsui_3458 0.65 -2.9
3,721,827 + Dsui_3458 0.72 -3.6
3,721,874 - +0.7
3,721,967 + Dsui_3458 0.88 -2.1
3,722,050 + -2.3
3,722,057 - -1.3
3,722,057 - +0.7
3,722,083 + -1.8
3,722,083 + -2.0
3,722,083 + -3.0
3,722,083 + -2.1
3,722,091 - +0.7
3,722,091 - +0.7
3,722,184 + -2.6
3,722,186 - +0.7
3,722,192 - -1.3
3,722,241 + Dsui_3459 0.16 -3.9
3,722,241 + Dsui_3459 0.16 -2.9
3,722,249 - +0.7
3,722,346 + Dsui_3459 0.29 -2.4
3,722,444 + Dsui_3459 0.41 -2.9
3,722,590 + Dsui_3459 0.59 -3.7
3,722,649 + Dsui_3459 0.66 -5.3
3,722,649 - +0.7
3,722,691 + Dsui_3459 0.71 -3.3
3,722,766 + Dsui_3459 0.81 -2.6
3,722,861 + -3.2
3,723,247 + -1.3
3,723,459 - -1.3
3,723,759 + +0.7
3,723,831 + Dsui_3461 0.32 -0.3
3,723,884 + Dsui_3461 0.35 -0.9
3,723,908 + -1.3
3,723,913 + -0.3
3,723,921 - Dsui_3461 0.37 -0.9

Or see this region's nucleotide sequence