Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3373 and Dsui_3374 are separated by 20 nucleotides Dsui_3374 and Dsui_3375 are separated by 143 nucleotides Dsui_3375 and Dsui_3376 are separated by 180 nucleotides Dsui_3376 and Dsui_3377 are separated by 186 nucleotides
Dsui_3373: Dsui_3373 - Na+/phosphate symporter, at 3,615,423 to 3,617,114
_3373
Dsui_3374: Dsui_3374 - cyclic nucleotide-binding protein, at 3,617,135 to 3,617,500
_3374
Dsui_3375: Dsui_3375 - hypothetical protein, at 3,617,644 to 3,617,820
_3375
Dsui_3376: Dsui_3376 - aspartate/tyrosine/aromatic aminotransferase, at 3,618,001 to 3,619,167
_3376
Dsui_3377: Dsui_3377 - Uncharacterized protein conserved in bacteria (DUF2325), at 3,619,354 to 3,620,076
_3377
Position (kb)
3618
3619
3620 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3617.150 kb on - strand at 3617.208 kb on + strand, within Dsui_3374 at 3617.208 kb on + strand, within Dsui_3374 at 3617.247 kb on - strand at 3617.335 kb on + strand, within Dsui_3374 at 3617.354 kb on + strand, within Dsui_3374 at 3617.367 kb on + strand, within Dsui_3374 at 3617.428 kb on - strand at 3617.531 kb on + strand at 3617.769 kb on - strand, within Dsui_3375 at 3618.125 kb on - strand, within Dsui_3376 at 3618.187 kb on - strand, within Dsui_3376 at 3618.207 kb on + strand at 3618.345 kb on - strand, within Dsui_3376 at 3618.358 kb on + strand at 3618.382 kb on + strand at 3618.384 kb on + strand at 3618.509 kb on - strand, within Dsui_3376 at 3618.724 kb on - strand, within Dsui_3376 at 3618.798 kb on - strand, within Dsui_3376 at 3618.798 kb on - strand, within Dsui_3376 at 3618.882 kb on + strand, within Dsui_3376 at 3618.916 kb on + strand, within Dsui_3376 at 3618.944 kb on + strand at 3618.984 kb on + strand, within Dsui_3376 at 3619.034 kb on - strand, within Dsui_3376 at 3619.034 kb on - strand, within Dsui_3376 at 3619.065 kb on + strand at 3619.124 kb on + strand at 3619.126 kb on - strand at 3619.132 kb on - strand at 3619.209 kb on - strand at 3619.278 kb on + strand at 3619.489 kb on - strand, within Dsui_3377 at 3619.532 kb on - strand, within Dsui_3377 at 3619.575 kb on - strand, within Dsui_3377 at 3619.633 kb on - strand, within Dsui_3377 at 3619.704 kb on - strand, within Dsui_3377 at 3619.772 kb on - strand at 3620.082 kb on + strand at 3620.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 3,617,150 - -2.8 3,617,208 + Dsui_3374 0.20 -2.1 3,617,208 + Dsui_3374 0.20 +1.7 3,617,247 - +0.7 3,617,335 + Dsui_3374 0.55 +0.7 3,617,354 + Dsui_3374 0.60 +0.1 3,617,367 + Dsui_3374 0.63 -2.0 3,617,428 - +0.7 3,617,531 + -0.3 3,617,769 - Dsui_3375 0.71 -1.1 3,618,125 - Dsui_3376 0.11 -0.8 3,618,187 - Dsui_3376 0.16 -0.9 3,618,207 + +0.7 3,618,345 - Dsui_3376 0.29 -1.2 3,618,358 + +0.7 3,618,382 + +0.7 3,618,384 + +0.7 3,618,509 - Dsui_3376 0.44 -1.0 3,618,724 - Dsui_3376 0.62 -0.4 3,618,798 - Dsui_3376 0.68 -0.8 3,618,798 - Dsui_3376 0.68 -0.8 3,618,882 + Dsui_3376 0.75 -0.9 3,618,916 + Dsui_3376 0.78 -0.3 3,618,944 + +0.7 3,618,984 + Dsui_3376 0.84 -1.3 3,619,034 - Dsui_3376 0.89 -1.6 3,619,034 - Dsui_3376 0.89 -0.9 3,619,065 + -1.9 3,619,124 + +0.7 3,619,126 - -0.4 3,619,132 - -1.3 3,619,209 - -0.9 3,619,278 + +0.7 3,619,489 - Dsui_3377 0.19 -0.9 3,619,532 - Dsui_3377 0.25 -1.9 3,619,575 - Dsui_3377 0.31 +0.7 3,619,633 - Dsui_3377 0.39 -0.9 3,619,704 - Dsui_3377 0.48 -2.1 3,619,772 - +0.7 3,620,082 + -0.9 3,620,095 - +0.7
Or see this region's nucleotide sequence