Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3320 and Dsui_3321 are separated by 153 nucleotides Dsui_3321 and Dsui_3322 are separated by 132 nucleotides Dsui_3322 and Dsui_3323 are separated by 137 nucleotides
Dsui_3320: Dsui_3320 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase, at 3,560,493 to 3,561,413
_3320
Dsui_3321: Dsui_3321 - tRNA-Leu, at 3,561,567 to 3,561,653
_3321
Dsui_3322: Dsui_3322 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 3,561,786 to 3,562,823
_3322
Dsui_3323: Dsui_3323 - tRNA-guanine transglycosylase, queuosine-34-forming, at 3,562,961 to 3,564,085
_3323
Position (kb)
3561
3562
3563 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3560.789 kb on + strand, within Dsui_3320 at 3560.830 kb on + strand, within Dsui_3320 at 3560.877 kb on - strand, within Dsui_3320 at 3560.966 kb on - strand, within Dsui_3320 at 3561.086 kb on + strand, within Dsui_3320 at 3561.141 kb on + strand at 3561.144 kb on - strand, within Dsui_3320 at 3561.152 kb on + strand, within Dsui_3320 at 3561.161 kb on + strand, within Dsui_3320 at 3561.199 kb on + strand at 3561.209 kb on + strand, within Dsui_3320 at 3561.217 kb on - strand, within Dsui_3320 at 3561.217 kb on - strand, within Dsui_3320 at 3561.437 kb on - strand at 3561.481 kb on + strand at 3561.489 kb on - strand at 3561.490 kb on - strand at 3561.524 kb on - strand at 3561.524 kb on - strand at 3561.665 kb on + strand at 3561.686 kb on - strand at 3561.768 kb on + strand at 3561.847 kb on + strand at 3561.889 kb on + strand at 3561.889 kb on + strand at 3561.921 kb on - strand at 3561.948 kb on + strand, within Dsui_3322 at 3562.016 kb on + strand, within Dsui_3322 at 3562.120 kb on + strand, within Dsui_3322 at 3562.260 kb on + strand, within Dsui_3322 at 3562.281 kb on + strand, within Dsui_3322 at 3562.419 kb on - strand at 3562.546 kb on - strand at 3562.558 kb on + strand, within Dsui_3322 at 3562.558 kb on + strand, within Dsui_3322 at 3562.684 kb on + strand at 3562.684 kb on + strand at 3562.684 kb on + strand, within Dsui_3322 at 3562.692 kb on - strand at 3562.695 kb on - strand at 3562.740 kb on + strand at 3562.740 kb on + strand at 3562.784 kb on + strand at 3562.824 kb on - strand at 3562.847 kb on + strand at 3562.847 kb on + strand at 3562.855 kb on - strand at 3562.877 kb on + strand at 3562.885 kb on - strand at 3562.888 kb on + strand at 3562.956 kb on + strand at 3562.956 kb on + strand at 3562.956 kb on + strand at 3562.956 kb on + strand at 3562.975 kb on + strand at 3563.030 kb on + strand at 3563.061 kb on + strand at 3563.061 kb on + strand at 3563.069 kb on - strand at 3563.111 kb on + strand, within Dsui_3323 at 3563.206 kb on + strand, within Dsui_3323 at 3563.263 kb on + strand, within Dsui_3323 at 3563.282 kb on + strand, within Dsui_3323 at 3563.633 kb on + strand, within Dsui_3323 at 3563.788 kb on + strand at 3563.789 kb on + strand, within Dsui_3323
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 3,560,789 + Dsui_3320 0.32 -1.9 3,560,830 + Dsui_3320 0.37 -0.3 3,560,877 - Dsui_3320 0.42 -0.3 3,560,966 - Dsui_3320 0.51 -0.5 3,561,086 + Dsui_3320 0.64 -2.3 3,561,141 + +0.7 3,561,144 - Dsui_3320 0.71 -0.2 3,561,152 + Dsui_3320 0.72 -0.9 3,561,161 + Dsui_3320 0.73 +0.7 3,561,199 + +0.7 3,561,209 + Dsui_3320 0.78 -0.9 3,561,217 - Dsui_3320 0.79 -0.1 3,561,217 - Dsui_3320 0.79 -0.6 3,561,437 - +0.3 3,561,481 + -0.3 3,561,489 - +0.6 3,561,490 - +0.5 3,561,524 - -0.1 3,561,524 - -0.1 3,561,665 + -0.9 3,561,686 - -0.5 3,561,768 + -2.5 3,561,847 + +2.1 3,561,889 + -1.5 3,561,889 + -1.0 3,561,921 - -0.3 3,561,948 + Dsui_3322 0.16 -0.3 3,562,016 + Dsui_3322 0.22 -2.2 3,562,120 + Dsui_3322 0.32 -0.9 3,562,260 + Dsui_3322 0.46 -0.3 3,562,281 + Dsui_3322 0.48 -0.6 3,562,419 - +0.7 3,562,546 - -0.3 3,562,558 + Dsui_3322 0.74 -1.2 3,562,558 + Dsui_3322 0.74 +2.3 3,562,684 + +0.7 3,562,684 + +1.7 3,562,684 + Dsui_3322 0.87 -0.1 3,562,692 - -0.3 3,562,695 - -1.6 3,562,740 + -0.7 3,562,740 + +0.3 3,562,784 + +0.5 3,562,824 - +0.7 3,562,847 + -0.7 3,562,847 + -0.6 3,562,855 - -0.9 3,562,877 + -0.5 3,562,885 - +0.7 3,562,888 + -0.2 3,562,956 + -1.6 3,562,956 + -0.9 3,562,956 + -0.1 3,562,956 + +2.3 3,562,975 + -1.6 3,563,030 + +0.7 3,563,061 + -0.3 3,563,061 + +0.7 3,563,069 - +0.7 3,563,111 + Dsui_3323 0.13 +0.7 3,563,206 + Dsui_3323 0.22 -0.9 3,563,263 + Dsui_3323 0.27 -0.3 3,563,282 + Dsui_3323 0.29 -0.9 3,563,633 + Dsui_3323 0.60 -0.3 3,563,788 + +0.7 3,563,789 + Dsui_3323 0.74 -0.9
Or see this region's nucleotide sequence