Strain Fitness in Dechlorosoma suillum PS around Dsui_3296

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3295 and Dsui_3296 are separated by 371 nucleotidesDsui_3296 and Dsui_3297 are separated by 84 nucleotidesDsui_3297 and Dsui_3298 are separated by 122 nucleotides Dsui_3295: Dsui_3295 - isocitrate dehydrogenase, NADP-dependent, monomeric type, at 3,535,470 to 3,537,710 _3295 Dsui_3296: Dsui_3296 - isocitrate dehydrogenase, NADP-dependent, prokaryotic type, at 3,538,082 to 3,539,308 _3296 Dsui_3297: Dsui_3297 - nitroreductase, at 3,539,393 to 3,540,046 _3297 Dsui_3298: Dsui_3298 - Kef-type K+ transport system, predicted NAD-binding component, at 3,540,169 to 3,541,869 _3298 Position (kb) 3538 3539 3540Strain fitness (log2 ratio) -2 -1 0 1at 3537.137 kb on + strand, within Dsui_3295at 3537.316 kb on + strand, within Dsui_3295at 3537.473 kb on + strand, within Dsui_3295at 3537.580 kb on + strandat 3537.674 kb on + strandat 3537.725 kb on + strandat 3537.732 kb on + strandat 3537.745 kb on - strandat 3537.928 kb on - strandat 3537.975 kb on - strandat 3538.012 kb on + strandat 3538.056 kb on - strandat 3538.063 kb on - strandat 3538.079 kb on - strandat 3538.086 kb on + strandat 3538.093 kb on + strandat 3538.101 kb on - strandat 3538.110 kb on - strandat 3538.110 kb on - strandat 3538.165 kb on + strandat 3538.202 kb on + strandat 3538.205 kb on - strandat 3538.260 kb on - strand, within Dsui_3296at 3538.300 kb on + strand, within Dsui_3296at 3538.308 kb on - strand, within Dsui_3296at 3538.310 kb on + strand, within Dsui_3296at 3538.324 kb on + strand, within Dsui_3296at 3538.344 kb on + strand, within Dsui_3296at 3538.352 kb on - strand, within Dsui_3296at 3538.410 kb on + strand, within Dsui_3296at 3538.418 kb on - strand, within Dsui_3296at 3538.471 kb on + strand, within Dsui_3296at 3538.479 kb on - strand, within Dsui_3296at 3538.499 kb on - strand, within Dsui_3296at 3538.500 kb on + strand, within Dsui_3296at 3538.500 kb on + strand, within Dsui_3296at 3538.508 kb on - strand, within Dsui_3296at 3538.518 kb on - strand, within Dsui_3296at 3538.541 kb on + strand, within Dsui_3296at 3538.575 kb on + strand, within Dsui_3296at 3538.575 kb on + strand, within Dsui_3296at 3538.575 kb on + strand, within Dsui_3296at 3538.575 kb on + strand, within Dsui_3296at 3538.583 kb on - strand, within Dsui_3296at 3538.583 kb on - strand, within Dsui_3296at 3538.587 kb on + strand, within Dsui_3296at 3538.714 kb on + strand, within Dsui_3296at 3538.805 kb on + strand, within Dsui_3296at 3538.813 kb on - strand, within Dsui_3296at 3538.816 kb on + strand, within Dsui_3296at 3538.838 kb on + strand, within Dsui_3296at 3538.843 kb on + strand, within Dsui_3296at 3538.941 kb on + strand, within Dsui_3296at 3538.974 kb on - strand, within Dsui_3296at 3539.005 kb on + strand, within Dsui_3296at 3539.048 kb on - strand, within Dsui_3296at 3539.048 kb on - strand, within Dsui_3296at 3539.048 kb on - strandat 3539.101 kb on + strand, within Dsui_3296at 3539.101 kb on + strand, within Dsui_3296at 3539.226 kb on - strandat 3539.266 kb on + strandat 3539.266 kb on + strandat 3539.302 kb on + strandat 3539.310 kb on - strandat 3539.476 kb on + strand, within Dsui_3297at 3539.543 kb on + strand, within Dsui_3297at 3539.543 kb on + strand, within Dsui_3297at 3539.621 kb on - strand, within Dsui_3297at 3539.703 kb on + strand, within Dsui_3297at 3539.773 kb on + strand, within Dsui_3297at 3539.806 kb on + strandat 3539.824 kb on + strand, within Dsui_3297at 3539.832 kb on - strand, within Dsui_3297at 3539.873 kb on + strand, within Dsui_3297at 3539.873 kb on + strand, within Dsui_3297at 3539.950 kb on - strand, within Dsui_3297at 3540.012 kb on + strandat 3540.020 kb on - strandat 3540.020 kb on - strandat 3540.100 kb on + strandat 3540.175 kb on + strandat 3540.220 kb on - strandat 3540.233 kb on + strandat 3540.283 kb on - strandat 3540.300 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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3,537,137 + Dsui_3295 0.74 -2.1
3,537,316 + Dsui_3295 0.82 -2.4
3,537,473 + Dsui_3295 0.89 -2.2
3,537,580 + -1.4
3,537,674 + -0.2
3,537,725 + +0.9
3,537,732 + +0.3
3,537,745 - +0.7
3,537,928 - -0.3
3,537,975 - +0.7
3,538,012 + -0.3
3,538,056 - +0.7
3,538,063 - -0.3
3,538,079 - +1.7
3,538,086 + -0.7
3,538,093 + +0.1
3,538,101 - -0.3
3,538,110 - +0.7
3,538,110 - -1.6
3,538,165 + -0.7
3,538,202 + -1.6
3,538,205 - +0.7
3,538,260 - Dsui_3296 0.15 -0.3
3,538,300 + Dsui_3296 0.18 -0.1
3,538,308 - Dsui_3296 0.18 -0.3
3,538,310 + Dsui_3296 0.19 -0.5
3,538,324 + Dsui_3296 0.20 -0.2
3,538,344 + Dsui_3296 0.21 -0.9
3,538,352 - Dsui_3296 0.22 -0.3
3,538,410 + Dsui_3296 0.27 -1.9
3,538,418 - Dsui_3296 0.27 -0.3
3,538,471 + Dsui_3296 0.32 +0.4
3,538,479 - Dsui_3296 0.32 +0.7
3,538,499 - Dsui_3296 0.34 +0.7
3,538,500 + Dsui_3296 0.34 -2.2
3,538,500 + Dsui_3296 0.34 -0.2
3,538,508 - Dsui_3296 0.35 +0.7
3,538,518 - Dsui_3296 0.36 -0.3
3,538,541 + Dsui_3296 0.37 -0.5
3,538,575 + Dsui_3296 0.40 -0.8
3,538,575 + Dsui_3296 0.40 +0.1
3,538,575 + Dsui_3296 0.40 -0.6
3,538,575 + Dsui_3296 0.40 +0.4
3,538,583 - Dsui_3296 0.41 -0.9
3,538,583 - Dsui_3296 0.41 -0.9
3,538,587 + Dsui_3296 0.41 -0.3
3,538,714 + Dsui_3296 0.52 -0.5
3,538,805 + Dsui_3296 0.59 -0.2
3,538,813 - Dsui_3296 0.60 -0.3
3,538,816 + Dsui_3296 0.60 -0.4
3,538,838 + Dsui_3296 0.62 -0.4
3,538,843 + Dsui_3296 0.62 -0.6
3,538,941 + Dsui_3296 0.70 -0.0
3,538,974 - Dsui_3296 0.73 +0.7
3,539,005 + Dsui_3296 0.75 -0.9
3,539,048 - Dsui_3296 0.79 -1.6
3,539,048 - Dsui_3296 0.79 +0.7
3,539,048 - +0.7
3,539,101 + Dsui_3296 0.83 +0.2
3,539,101 + Dsui_3296 0.83 -0.3
3,539,226 - +0.7
3,539,266 + -1.5
3,539,266 + -2.5
3,539,302 + +0.5
3,539,310 - -1.9
3,539,476 + Dsui_3297 0.13 -1.9
3,539,543 + Dsui_3297 0.23 +0.7
3,539,543 + Dsui_3297 0.23 +0.7
3,539,621 - Dsui_3297 0.35 +0.2
3,539,703 + Dsui_3297 0.47 +0.7
3,539,773 + Dsui_3297 0.58 -0.3
3,539,806 + +0.7
3,539,824 + Dsui_3297 0.66 -0.3
3,539,832 - Dsui_3297 0.67 +0.5
3,539,873 + Dsui_3297 0.73 +0.7
3,539,873 + Dsui_3297 0.73 +0.1
3,539,950 - Dsui_3297 0.85 -0.2
3,540,012 + +0.7
3,540,020 - -0.3
3,540,020 - -1.1
3,540,100 + -0.3
3,540,175 + -0.3
3,540,220 - -1.5
3,540,233 + +0.7
3,540,283 - -1.3
3,540,300 + -0.9

Or see this region's nucleotide sequence