Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3286 and Dsui_3287 are separated by 64 nucleotides Dsui_3287 and Dsui_3288 are separated by 64 nucleotides Dsui_3288 and Dsui_3289 are separated by 150 nucleotides
Dsui_3286: Dsui_3286 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,527,814 to 3,529,199
_3286
Dsui_3287: Dsui_3287 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 3,529,264 to 3,530,448
_3287
Dsui_3288: Dsui_3288 - anti-anti-sigma factor, at 3,530,513 to 3,530,824
_3288
Dsui_3289: Dsui_3289 - hypothetical protein, at 3,530,975 to 3,531,568
_3289
Position (kb)
3529
3530
3531 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3528.266 kb on - strand, within Dsui_3286 at 3528.467 kb on + strand at 3528.506 kb on - strand, within Dsui_3286 at 3528.506 kb on - strand, within Dsui_3286 at 3528.574 kb on + strand, within Dsui_3286 at 3528.636 kb on - strand, within Dsui_3286 at 3528.743 kb on - strand, within Dsui_3286 at 3528.936 kb on + strand at 3528.987 kb on - strand, within Dsui_3286 at 3528.998 kb on + strand, within Dsui_3286 at 3529.042 kb on - strand, within Dsui_3286 at 3529.042 kb on - strand, within Dsui_3286 at 3529.047 kb on - strand, within Dsui_3286 at 3529.069 kb on + strand at 3529.202 kb on - strand at 3529.268 kb on - strand at 3529.342 kb on + strand at 3529.343 kb on - strand at 3529.350 kb on - strand at 3529.452 kb on + strand at 3529.453 kb on - strand, within Dsui_3287 at 3529.460 kb on - strand, within Dsui_3287 at 3529.460 kb on - strand, within Dsui_3287 at 3529.638 kb on + strand at 3529.653 kb on - strand, within Dsui_3287 at 3529.676 kb on + strand at 3529.678 kb on + strand, within Dsui_3287 at 3529.705 kb on - strand, within Dsui_3287 at 3529.783 kb on + strand, within Dsui_3287 at 3529.809 kb on - strand at 3529.907 kb on - strand, within Dsui_3287 at 3529.908 kb on + strand, within Dsui_3287 at 3529.941 kb on + strand at 3530.024 kb on - strand, within Dsui_3287 at 3530.100 kb on - strand, within Dsui_3287 at 3530.106 kb on - strand, within Dsui_3287 at 3530.140 kb on + strand at 3530.166 kb on + strand at 3530.182 kb on + strand, within Dsui_3287 at 3530.198 kb on - strand, within Dsui_3287 at 3530.211 kb on + strand at 3530.266 kb on - strand at 3530.266 kb on - strand, within Dsui_3287 at 3530.271 kb on - strand, within Dsui_3287 at 3530.271 kb on - strand, within Dsui_3287 at 3530.364 kb on + strand at 3530.406 kb on - strand at 3530.415 kb on + strand at 3530.415 kb on + strand at 3530.415 kb on + strand at 3530.420 kb on + strand at 3530.423 kb on - strand at 3530.423 kb on - strand at 3530.430 kb on + strand at 3530.438 kb on - strand at 3530.491 kb on + strand at 3530.511 kb on + strand at 3530.745 kb on + strand, within Dsui_3288 at 3530.753 kb on - strand, within Dsui_3288 at 3530.753 kb on - strand, within Dsui_3288 at 3530.759 kb on - strand, within Dsui_3288 at 3530.773 kb on - strand, within Dsui_3288 at 3530.776 kb on - strand, within Dsui_3288 at 3530.790 kb on + strand at 3530.798 kb on - strand at 3530.854 kb on + strand at 3530.858 kb on + strand at 3530.900 kb on + strand at 3530.954 kb on - strand at 3530.993 kb on + strand at 3531.030 kb on + strand at 3531.030 kb on + strand at 3531.038 kb on - strand, within Dsui_3289 at 3531.038 kb on - strand, within Dsui_3289 at 3531.174 kb on - strand, within Dsui_3289 at 3531.232 kb on + strand at 3531.280 kb on - strand, within Dsui_3289 at 3531.281 kb on + strand at 3531.330 kb on - strand, within Dsui_3289 at 3531.379 kb on - strand, within Dsui_3289 at 3531.384 kb on - strand, within Dsui_3289
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 3,528,266 - Dsui_3286 0.33 -0.5 3,528,467 + +0.7 3,528,506 - Dsui_3286 0.50 -0.1 3,528,506 - Dsui_3286 0.50 +1.4 3,528,574 + Dsui_3286 0.55 +0.7 3,528,636 - Dsui_3286 0.59 -1.8 3,528,743 - Dsui_3286 0.67 -1.8 3,528,936 + +0.7 3,528,987 - Dsui_3286 0.85 -1.9 3,528,998 + Dsui_3286 0.85 +0.7 3,529,042 - Dsui_3286 0.89 -0.3 3,529,042 - Dsui_3286 0.89 +0.7 3,529,047 - Dsui_3286 0.89 -1.6 3,529,069 + -1.6 3,529,202 - -1.0 3,529,268 - -1.4 3,529,342 + -0.3 3,529,343 - -0.9 3,529,350 - -0.3 3,529,452 + -0.9 3,529,453 - Dsui_3287 0.16 -1.3 3,529,460 - Dsui_3287 0.17 -0.3 3,529,460 - Dsui_3287 0.17 -0.9 3,529,638 + +0.7 3,529,653 - Dsui_3287 0.33 -0.3 3,529,676 + +0.7 3,529,678 + Dsui_3287 0.35 -0.3 3,529,705 - Dsui_3287 0.37 -1.3 3,529,783 + Dsui_3287 0.44 +0.2 3,529,809 - +0.7 3,529,907 - Dsui_3287 0.54 -2.1 3,529,908 + Dsui_3287 0.54 -0.3 3,529,941 + -0.9 3,530,024 - Dsui_3287 0.64 +0.7 3,530,100 - Dsui_3287 0.71 -1.6 3,530,106 - Dsui_3287 0.71 +0.7 3,530,140 + +0.7 3,530,166 + +0.7 3,530,182 + Dsui_3287 0.77 -0.9 3,530,198 - Dsui_3287 0.79 -0.3 3,530,211 + +0.7 3,530,266 - +0.7 3,530,266 - Dsui_3287 0.85 -1.6 3,530,271 - Dsui_3287 0.85 -1.2 3,530,271 - Dsui_3287 0.85 -0.9 3,530,364 + +0.7 3,530,406 - +0.1 3,530,415 + +0.7 3,530,415 + -1.3 3,530,415 + -0.9 3,530,420 + -1.3 3,530,423 - -2.3 3,530,423 - -2.4 3,530,430 + +0.7 3,530,438 - -1.7 3,530,491 + +0.7 3,530,511 + -0.3 3,530,745 + Dsui_3288 0.74 -1.6 3,530,753 - Dsui_3288 0.77 +0.3 3,530,753 - Dsui_3288 0.77 +0.7 3,530,759 - Dsui_3288 0.79 -0.3 3,530,773 - Dsui_3288 0.83 -0.4 3,530,776 - Dsui_3288 0.84 -0.4 3,530,790 + +0.7 3,530,798 - -0.4 3,530,854 + -0.3 3,530,858 + -0.3 3,530,900 + +0.7 3,530,954 - -0.0 3,530,993 + +0.7 3,531,030 + -0.3 3,531,030 + +0.7 3,531,038 - Dsui_3289 0.11 -0.9 3,531,038 - Dsui_3289 0.11 +0.7 3,531,174 - Dsui_3289 0.34 -1.6 3,531,232 + +0.7 3,531,280 - Dsui_3289 0.51 -3.1 3,531,281 + -0.3 3,531,330 - Dsui_3289 0.60 -1.3 3,531,379 - Dsui_3289 0.68 -0.4 3,531,384 - Dsui_3289 0.69 +0.3
Or see this region's nucleotide sequence