Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3223 and Dsui_3224 are separated by 11 nucleotides Dsui_3224 and Dsui_3225 overlap by 4 nucleotides Dsui_3225 and Dsui_3226 are separated by 278 nucleotides
Dsui_3223: Dsui_3223 - Zn-dependent protease with chaperone function, at 3,461,446 to 3,462,717
_3223
Dsui_3224: Dsui_3224 - pterin-4a-carbinolamine dehydratase, at 3,462,729 to 3,463,064
_3224
Dsui_3225: Dsui_3225 - ribosome small subunit-dependent GTPase A, at 3,463,061 to 3,463,948
_3225
Dsui_3226: Dsui_3226 - putative SAM-dependent methyltransferase, at 3,464,227 to 3,465,186
_3226
Position (kb)
3463
3464 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3462.152 kb on + strand, within Dsui_3223 at 3462.219 kb on + strand, within Dsui_3223 at 3462.249 kb on + strand, within Dsui_3223 at 3462.280 kb on - strand, within Dsui_3223 at 3462.286 kb on - strand at 3462.287 kb on + strand, within Dsui_3223 at 3462.319 kb on + strand, within Dsui_3223 at 3462.327 kb on - strand, within Dsui_3223 at 3462.332 kb on - strand, within Dsui_3223 at 3462.366 kb on + strand, within Dsui_3223 at 3462.409 kb on + strand, within Dsui_3223 at 3462.427 kb on + strand, within Dsui_3223 at 3462.464 kb on + strand, within Dsui_3223 at 3462.517 kb on + strand, within Dsui_3223 at 3462.535 kb on + strand, within Dsui_3223 at 3462.556 kb on - strand, within Dsui_3223 at 3462.563 kb on - strand, within Dsui_3223 at 3462.570 kb on + strand, within Dsui_3223 at 3462.605 kb on + strand at 3462.605 kb on + strand at 3462.605 kb on + strand at 3462.687 kb on + strand at 3462.698 kb on + strand at 3462.720 kb on - strand at 3462.740 kb on - strand at 3462.768 kb on - strand, within Dsui_3224 at 3462.962 kb on + strand, within Dsui_3224 at 3462.965 kb on - strand, within Dsui_3224 at 3462.970 kb on - strand, within Dsui_3224 at 3463.072 kb on + strand at 3463.079 kb on + strand at 3463.966 kb on - strand at 3464.058 kb on + strand at 3464.206 kb on + strand at 3464.263 kb on + strand at 3464.324 kb on + strand, within Dsui_3226 at 3464.372 kb on + strand, within Dsui_3226 at 3464.395 kb on - strand, within Dsui_3226 at 3464.486 kb on - strand, within Dsui_3226 at 3464.667 kb on - strand, within Dsui_3226 at 3464.681 kb on - strand at 3464.791 kb on + strand, within Dsui_3226
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 3,462,152 + Dsui_3223 0.56 -0.4 3,462,219 + Dsui_3223 0.61 -0.1 3,462,249 + Dsui_3223 0.63 -0.8 3,462,280 - Dsui_3223 0.66 +0.6 3,462,286 - +0.6 3,462,287 + Dsui_3223 0.66 +0.1 3,462,319 + Dsui_3223 0.69 -0.5 3,462,327 - Dsui_3223 0.69 -1.7 3,462,332 - Dsui_3223 0.70 -0.4 3,462,366 + Dsui_3223 0.72 -0.4 3,462,409 + Dsui_3223 0.76 -0.9 3,462,427 + Dsui_3223 0.77 -0.9 3,462,464 + Dsui_3223 0.80 -0.4 3,462,517 + Dsui_3223 0.84 -0.4 3,462,535 + Dsui_3223 0.86 -2.9 3,462,556 - Dsui_3223 0.87 -0.4 3,462,563 - Dsui_3223 0.88 -1.4 3,462,570 + Dsui_3223 0.88 -1.1 3,462,605 + -0.7 3,462,605 + -0.7 3,462,605 + -0.1 3,462,687 + -0.2 3,462,698 + -1.1 3,462,720 - +0.6 3,462,740 - -0.4 3,462,768 - Dsui_3224 0.12 +0.6 3,462,962 + Dsui_3224 0.69 -1.4 3,462,965 - Dsui_3224 0.70 +0.6 3,462,970 - Dsui_3224 0.72 -1.0 3,463,072 + -0.8 3,463,079 + -3.7 3,463,966 - -0.4 3,464,058 + -1.0 3,464,206 + -1.0 3,464,263 + -0.4 3,464,324 + Dsui_3226 0.10 +0.6 3,464,372 + Dsui_3226 0.15 +0.6 3,464,395 - Dsui_3226 0.17 -1.0 3,464,486 - Dsui_3226 0.27 -1.7 3,464,667 - Dsui_3226 0.46 -2.5 3,464,681 - +0.6 3,464,791 + Dsui_3226 0.59 -2.0
Or see this region's nucleotide sequence