Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3201 and Dsui_3202 are separated by 92 nucleotides Dsui_3202 and Dsui_3203 are separated by 30 nucleotides Dsui_3203 and Dsui_3204 are separated by 68 nucleotides
Dsui_3201: Dsui_3201 - 3-isopropylmalate dehydratase, large subunit, at 3,436,248 to 3,437,654
_3201
Dsui_3202: Dsui_3202 - Peptidase family M48, at 3,437,747 to 3,438,619
_3202
Dsui_3203: Dsui_3203 - arabinose efflux permease family protein, at 3,438,650 to 3,439,816
_3203
Dsui_3204: Dsui_3204 - chorismate synthase, at 3,439,885 to 3,440,991
_3204
Position (kb)
3438
3439
3440 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3437.730 kb on - strand at 3437.838 kb on + strand at 3437.871 kb on - strand, within Dsui_3202 at 3437.980 kb on - strand, within Dsui_3202 at 3437.998 kb on - strand, within Dsui_3202 at 3438.004 kb on - strand, within Dsui_3202 at 3438.041 kb on - strand, within Dsui_3202 at 3438.093 kb on - strand, within Dsui_3202 at 3438.098 kb on - strand, within Dsui_3202 at 3438.129 kb on - strand, within Dsui_3202 at 3438.252 kb on - strand, within Dsui_3202 at 3438.308 kb on - strand, within Dsui_3202 at 3438.356 kb on - strand, within Dsui_3202 at 3438.369 kb on - strand, within Dsui_3202 at 3438.499 kb on - strand, within Dsui_3202 at 3438.656 kb on - strand at 3438.693 kb on - strand at 3438.763 kb on - strand at 3438.773 kb on - strand, within Dsui_3203 at 3438.773 kb on - strand, within Dsui_3203 at 3438.906 kb on - strand, within Dsui_3203 at 3439.156 kb on + strand at 3439.202 kb on - strand, within Dsui_3203 at 3439.326 kb on - strand, within Dsui_3203 at 3439.443 kb on + strand at 3439.486 kb on - strand, within Dsui_3203 at 3439.513 kb on - strand, within Dsui_3203 at 3439.575 kb on - strand, within Dsui_3203 at 3439.669 kb on - strand, within Dsui_3203 at 3439.676 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 3,437,730 - -1.0 3,437,838 + +0.6 3,437,871 - Dsui_3202 0.14 +0.6 3,437,980 - Dsui_3202 0.27 +0.6 3,437,998 - Dsui_3202 0.29 -1.0 3,438,004 - Dsui_3202 0.29 -1.7 3,438,041 - Dsui_3202 0.34 -1.2 3,438,093 - Dsui_3202 0.40 -0.8 3,438,098 - Dsui_3202 0.40 -1.0 3,438,129 - Dsui_3202 0.44 -0.4 3,438,252 - Dsui_3202 0.58 +0.6 3,438,308 - Dsui_3202 0.64 +0.5 3,438,356 - Dsui_3202 0.70 +0.2 3,438,369 - Dsui_3202 0.71 -2.0 3,438,499 - Dsui_3202 0.86 -0.4 3,438,656 - +0.4 3,438,693 - +0.6 3,438,763 - -1.6 3,438,773 - Dsui_3203 0.11 -1.7 3,438,773 - Dsui_3203 0.11 -1.0 3,438,906 - Dsui_3203 0.22 +0.6 3,439,156 + -1.0 3,439,202 - Dsui_3203 0.47 -3.2 3,439,326 - Dsui_3203 0.58 -1.9 3,439,443 + +0.6 3,439,486 - Dsui_3203 0.72 -0.4 3,439,513 - Dsui_3203 0.74 +0.6 3,439,575 - Dsui_3203 0.79 -0.4 3,439,669 - Dsui_3203 0.87 -2.5 3,439,676 + +0.6
Or see this region's nucleotide sequence