Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3030 and Dsui_3031 are separated by 289 nucleotides Dsui_3031 and Dsui_3032 are separated by 33 nucleotides
Dsui_3030: Dsui_3030 - NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit, at 3,240,952 to 3,242,760
_3030
Dsui_3031: Dsui_3031 - enoyl-(acyl-carrier-protein) reductase (NADH), at 3,243,050 to 3,243,814
_3031
Dsui_3032: Dsui_3032 - phosphotransacetylase, at 3,243,848 to 3,245,260
_3032
Position (kb)
3243
3244 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3242.079 kb on + strand, within Dsui_3030 at 3242.087 kb on - strand, within Dsui_3030 at 3242.127 kb on + strand, within Dsui_3030 at 3242.159 kb on - strand, within Dsui_3030 at 3242.218 kb on - strand, within Dsui_3030 at 3242.250 kb on + strand, within Dsui_3030 at 3242.282 kb on - strand, within Dsui_3030 at 3242.468 kb on + strand at 3242.486 kb on - strand, within Dsui_3030 at 3242.609 kb on - strand at 3242.609 kb on - strand at 3242.609 kb on - strand at 3242.609 kb on - strand at 3242.728 kb on - strand at 3242.800 kb on - strand at 3242.800 kb on - strand at 3242.826 kb on - strand at 3242.836 kb on - strand at 3242.993 kb on + strand at 3242.994 kb on + strand at 3243.001 kb on - strand at 3243.009 kb on - strand at 3243.042 kb on - strand at 3243.097 kb on + strand at 3243.103 kb on + strand at 3243.118 kb on - strand at 3243.118 kb on - strand at 3243.118 kb on - strand at 3243.118 kb on - strand at 3243.284 kb on + strand, within Dsui_3031 at 3243.321 kb on + strand, within Dsui_3031 at 3243.359 kb on + strand, within Dsui_3031 at 3243.367 kb on - strand, within Dsui_3031 at 3243.380 kb on + strand, within Dsui_3031 at 3243.441 kb on + strand, within Dsui_3031 at 3243.495 kb on + strand, within Dsui_3031 at 3243.508 kb on - strand at 3243.684 kb on + strand, within Dsui_3031 at 3243.825 kb on - strand at 3243.851 kb on - strand at 3243.857 kb on + strand at 3243.915 kb on + strand at 3244.034 kb on + strand, within Dsui_3032 at 3244.042 kb on - strand, within Dsui_3032 at 3244.498 kb on + strand, within Dsui_3032 at 3244.524 kb on + strand, within Dsui_3032 at 3244.532 kb on - strand, within Dsui_3032 at 3244.737 kb on + strand, within Dsui_3032 at 3244.798 kb on + strand, within Dsui_3032
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 3,242,079 + Dsui_3030 0.62 -0.3 3,242,087 - Dsui_3030 0.63 +0.7 3,242,127 + Dsui_3030 0.65 -1.6 3,242,159 - Dsui_3030 0.67 -0.3 3,242,218 - Dsui_3030 0.70 -0.3 3,242,250 + Dsui_3030 0.72 +0.7 3,242,282 - Dsui_3030 0.74 -0.9 3,242,468 + +0.7 3,242,486 - Dsui_3030 0.85 +0.7 3,242,609 - -3.2 3,242,609 - +0.7 3,242,609 - -0.3 3,242,609 - -0.9 3,242,728 - +0.7 3,242,800 - -0.3 3,242,800 - -0.3 3,242,826 - -0.3 3,242,836 - +0.7 3,242,993 + -0.2 3,242,994 + +0.7 3,243,001 - +0.7 3,243,009 - +0.7 3,243,042 - -0.3 3,243,097 + -0.1 3,243,103 + -0.2 3,243,118 - -1.3 3,243,118 - -0.3 3,243,118 - -0.3 3,243,118 - +0.7 3,243,284 + Dsui_3031 0.31 -0.5 3,243,321 + Dsui_3031 0.35 -0.5 3,243,359 + Dsui_3031 0.40 +0.2 3,243,367 - Dsui_3031 0.41 -0.9 3,243,380 + Dsui_3031 0.43 -0.2 3,243,441 + Dsui_3031 0.51 -0.3 3,243,495 + Dsui_3031 0.58 -0.0 3,243,508 - +0.7 3,243,684 + Dsui_3031 0.83 +0.5 3,243,825 - -0.3 3,243,851 - -1.3 3,243,857 + -0.4 3,243,915 + +0.5 3,244,034 + Dsui_3032 0.13 +0.6 3,244,042 - Dsui_3032 0.14 -0.3 3,244,498 + Dsui_3032 0.46 -0.6 3,244,524 + Dsui_3032 0.48 -1.3 3,244,532 - Dsui_3032 0.48 -0.3 3,244,737 + Dsui_3032 0.63 +0.1 3,244,798 + Dsui_3032 0.67 -0.2
Or see this region's nucleotide sequence