Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2910 and Dsui_2911 are separated by 5 nucleotides Dsui_2911 and Dsui_2912 are separated by 277 nucleotides Dsui_2912 and Dsui_2913 are separated by 92 nucleotides Dsui_2913 and Dsui_2914 are separated by 29 nucleotides
Dsui_2910: Dsui_2910 - hypothetical protein, at 3,113,922 to 3,114,293
_2910
Dsui_2911: Dsui_2911 - cation/cationic drug transporter, at 3,114,299 to 3,114,673
_2911
Dsui_2912: Dsui_2912 - putative xylanase/chitin deacetylase, at 3,114,951 to 3,115,859
_2912
Dsui_2913: Dsui_2913 - dihydroxynaphthoate synthase, at 3,115,952 to 3,116,782
_2913
Dsui_2914: Dsui_2914 - cytochrome b, at 3,116,812 to 3,117,429
_2914
Position (kb)
3114
3115
3116 Strain fitness (log2 ratio)
-2
-1
0
1 at 3114.295 kb on - strand at 3114.441 kb on + strand, within Dsui_2911 at 3114.458 kb on - strand, within Dsui_2911 at 3114.488 kb on - strand at 3114.639 kb on + strand at 3114.645 kb on + strand at 3114.718 kb on + strand at 3114.725 kb on + strand at 3114.726 kb on - strand at 3114.738 kb on + strand at 3114.748 kb on - strand at 3114.748 kb on - strand at 3114.816 kb on - strand at 3114.872 kb on + strand at 3114.885 kb on + strand at 3114.893 kb on - strand at 3114.893 kb on - strand at 3114.898 kb on - strand at 3114.898 kb on - strand at 3114.961 kb on - strand at 3115.066 kb on + strand, within Dsui_2912 at 3115.140 kb on + strand, within Dsui_2912 at 3115.164 kb on + strand, within Dsui_2912 at 3115.169 kb on + strand, within Dsui_2912 at 3115.177 kb on - strand at 3115.177 kb on - strand, within Dsui_2912 at 3115.177 kb on - strand, within Dsui_2912 at 3115.298 kb on + strand, within Dsui_2912 at 3115.302 kb on - strand at 3115.451 kb on - strand, within Dsui_2912 at 3115.498 kb on + strand, within Dsui_2912 at 3115.666 kb on + strand, within Dsui_2912 at 3115.803 kb on + strand at 3115.959 kb on + strand at 3115.977 kb on - strand at 3116.040 kb on - strand, within Dsui_2913 at 3116.184 kb on + strand, within Dsui_2913 at 3116.278 kb on + strand, within Dsui_2913 at 3116.335 kb on + strand, within Dsui_2913 at 3116.399 kb on - strand at 3116.509 kb on - strand at 3116.512 kb on + strand, within Dsui_2913 at 3116.682 kb on + strand, within Dsui_2913 at 3116.832 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 3,114,295 - -0.2 3,114,441 + Dsui_2911 0.38 -0.5 3,114,458 - Dsui_2911 0.42 -1.5 3,114,488 - +0.8 3,114,639 + -1.3 3,114,645 + -1.0 3,114,718 + -0.4 3,114,725 + -0.3 3,114,726 - +0.8 3,114,738 + -2.5 3,114,748 - +0.8 3,114,748 - +0.8 3,114,816 - -1.2 3,114,872 + -0.8 3,114,885 + -1.4 3,114,893 - -0.2 3,114,893 - +0.8 3,114,898 - +0.8 3,114,898 - -0.2 3,114,961 - +0.8 3,115,066 + Dsui_2912 0.13 -0.4 3,115,140 + Dsui_2912 0.21 -2.4 3,115,164 + Dsui_2912 0.23 -1.6 3,115,169 + Dsui_2912 0.24 -0.3 3,115,177 - -0.2 3,115,177 - Dsui_2912 0.25 +0.8 3,115,177 - Dsui_2912 0.25 -0.8 3,115,298 + Dsui_2912 0.38 -0.8 3,115,302 - +0.8 3,115,451 - Dsui_2912 0.55 -0.8 3,115,498 + Dsui_2912 0.60 -1.4 3,115,666 + Dsui_2912 0.79 -1.5 3,115,803 + -0.8 3,115,959 + -0.0 3,115,977 - -2.0 3,116,040 - Dsui_2913 0.11 -0.8 3,116,184 + Dsui_2913 0.28 -0.5 3,116,278 + Dsui_2913 0.39 -1.4 3,116,335 + Dsui_2913 0.46 -0.8 3,116,399 - +0.8 3,116,509 - +0.8 3,116,512 + Dsui_2913 0.67 +0.1 3,116,682 + Dsui_2913 0.88 -0.9 3,116,832 + +0.8
Or see this region's nucleotide sequence