Strain Fitness in Dechlorosoma suillum PS around Dsui_2894

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2893 and Dsui_2894 are separated by 103 nucleotidesDsui_2894 and Dsui_2895 overlap by 4 nucleotidesDsui_2895 and Dsui_2896 are separated by 6 nucleotides Dsui_2893: Dsui_2893 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,092,664 to 3,094,172 _2893 Dsui_2894: Dsui_2894 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,094,276 to 3,096,444 _2894 Dsui_2895: Dsui_2895 - ABC-type uncharacterized transport system, periplasmic component, at 3,096,441 to 3,097,430 _2895 Dsui_2896: Dsui_2896 - outer membrane cobalamin receptor protein, at 3,097,437 to 3,099,677 _2896 Position (kb) 3094 3095 3096 3097Strain fitness (log2 ratio) -3 -2 -1 0 1at 3093.317 kb on + strandat 3093.358 kb on + strandat 3093.445 kb on - strand, within Dsui_2893at 3093.631 kb on - strand, within Dsui_2893at 3093.709 kb on - strand, within Dsui_2893at 3093.713 kb on + strand, within Dsui_2893at 3094.029 kb on + strandat 3094.042 kb on - strandat 3094.084 kb on - strandat 3094.105 kb on - strandat 3094.133 kb on + strandat 3094.141 kb on - strandat 3094.344 kb on + strandat 3094.421 kb on - strandat 3094.550 kb on + strand, within Dsui_2894at 3094.595 kb on + strandat 3094.666 kb on + strandat 3094.674 kb on - strand, within Dsui_2894at 3094.734 kb on - strand, within Dsui_2894at 3094.800 kb on - strand, within Dsui_2894at 3094.827 kb on - strand, within Dsui_2894at 3094.878 kb on - strand, within Dsui_2894at 3094.946 kb on - strand, within Dsui_2894at 3094.952 kb on + strandat 3095.047 kb on - strand, within Dsui_2894at 3095.094 kb on - strand, within Dsui_2894at 3095.252 kb on - strandat 3095.252 kb on - strand, within Dsui_2894at 3095.252 kb on - strand, within Dsui_2894at 3095.375 kb on - strand, within Dsui_2894at 3095.410 kb on - strand, within Dsui_2894at 3095.518 kb on - strand, within Dsui_2894at 3095.535 kb on - strand, within Dsui_2894at 3095.535 kb on - strand, within Dsui_2894at 3095.596 kb on - strand, within Dsui_2894at 3095.738 kb on + strandat 3095.878 kb on + strandat 3095.896 kb on - strand, within Dsui_2894at 3095.943 kb on + strandat 3095.945 kb on - strand, within Dsui_2894at 3095.945 kb on - strand, within Dsui_2894at 3096.049 kb on + strandat 3096.057 kb on - strand, within Dsui_2894at 3096.201 kb on - strand, within Dsui_2894at 3096.279 kb on - strandat 3096.347 kb on + strandat 3096.455 kb on - strandat 3096.460 kb on - strandat 3096.477 kb on - strandat 3096.566 kb on + strandat 3096.574 kb on - strand, within Dsui_2895at 3096.651 kb on + strandat 3096.712 kb on - strand, within Dsui_2895at 3096.862 kb on - strand, within Dsui_2895at 3096.878 kb on - strand, within Dsui_2895at 3096.964 kb on + strand, within Dsui_2895at 3097.161 kb on + strand, within Dsui_2895at 3097.339 kb on - strandat 3097.414 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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3,093,317 + +0.8
3,093,358 + -0.2
3,093,445 - Dsui_2893 0.52 -1.2
3,093,631 - Dsui_2893 0.64 -2.1
3,093,709 - Dsui_2893 0.69 -0.8
3,093,713 + Dsui_2893 0.70 -0.8
3,094,029 + -0.8
3,094,042 - -1.6
3,094,084 - -1.3
3,094,105 - -1.8
3,094,133 + +0.8
3,094,141 - +0.2
3,094,344 + +0.8
3,094,421 - -0.2
3,094,550 + Dsui_2894 0.13 -0.2
3,094,595 + -0.2
3,094,666 + +0.8
3,094,674 - Dsui_2894 0.18 -1.8
3,094,734 - Dsui_2894 0.21 -0.2
3,094,800 - Dsui_2894 0.24 +0.8
3,094,827 - Dsui_2894 0.25 -0.8
3,094,878 - Dsui_2894 0.28 -0.2
3,094,946 - Dsui_2894 0.31 +0.8
3,094,952 + +0.8
3,095,047 - Dsui_2894 0.36 -1.2
3,095,094 - Dsui_2894 0.38 +0.8
3,095,252 - +0.8
3,095,252 - Dsui_2894 0.45 +0.8
3,095,252 - Dsui_2894 0.45 +0.8
3,095,375 - Dsui_2894 0.51 -0.2
3,095,410 - Dsui_2894 0.52 -1.2
3,095,518 - Dsui_2894 0.57 +0.8
3,095,535 - Dsui_2894 0.58 -0.2
3,095,535 - Dsui_2894 0.58 +0.8
3,095,596 - Dsui_2894 0.61 +0.8
3,095,738 + +0.8
3,095,878 + +0.8
3,095,896 - Dsui_2894 0.75 -1.2
3,095,943 + -0.2
3,095,945 - Dsui_2894 0.77 -0.8
3,095,945 - Dsui_2894 0.77 +0.8
3,096,049 + -0.2
3,096,057 - Dsui_2894 0.82 +0.8
3,096,201 - Dsui_2894 0.89 -1.5
3,096,279 - -0.2
3,096,347 + -0.2
3,096,455 - -0.2
3,096,460 - +0.8
3,096,477 - +0.8
3,096,566 + -0.2
3,096,574 - Dsui_2895 0.13 -1.8
3,096,651 + -0.2
3,096,712 - Dsui_2895 0.27 -3.3
3,096,862 - Dsui_2895 0.43 +0.8
3,096,878 - Dsui_2895 0.44 -0.8
3,096,964 + Dsui_2895 0.53 -0.2
3,097,161 + Dsui_2895 0.73 -0.8
3,097,339 - -0.2
3,097,414 + -1.5

Or see this region's nucleotide sequence