Strain Fitness in Dechlorosoma suillum PS around Dsui_2805

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2804 and Dsui_2805 are separated by 40 nucleotidesDsui_2805 and Dsui_2806 are separated by 53 nucleotides Dsui_2804: Dsui_2804 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,974,941 to 2,976,557 _2804 Dsui_2805: Dsui_2805 - EamA-like transporter family, at 2,976,598 to 2,977,467 _2805 Dsui_2806: Dsui_2806 - PAS domain S-box, at 2,977,521 to 2,980,562 _2806 Position (kb) 2976 2977 2978Strain fitness (log2 ratio) -2 -1 0 1at 2975.779 kb on + strandat 2975.793 kb on - strand, within Dsui_2804at 2975.999 kb on - strand, within Dsui_2804at 2976.163 kb on - strand, within Dsui_2804at 2976.168 kb on - strand, within Dsui_2804at 2976.410 kb on + strandat 2976.507 kb on + strandat 2976.537 kb on - strandat 2976.539 kb on + strandat 2976.539 kb on + strandat 2976.819 kb on - strand, within Dsui_2805at 2976.963 kb on - strand, within Dsui_2805at 2977.097 kb on - strand, within Dsui_2805at 2977.433 kb on + strandat 2977.433 kb on + strandat 2977.441 kb on - strandat 2977.441 kb on - strandat 2977.451 kb on - strandat 2977.487 kb on + strandat 2977.490 kb on - strandat 2977.518 kb on - strandat 2977.567 kb on - strandat 2977.615 kb on - strandat 2977.667 kb on + strandat 2977.687 kb on - strandat 2977.736 kb on + strandat 2977.867 kb on - strand, within Dsui_2806at 2978.097 kb on - strand, within Dsui_2806at 2978.228 kb on + strandat 2978.234 kb on - strand, within Dsui_2806at 2978.281 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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2,975,779 + -0.2
2,975,793 - Dsui_2804 0.53 -1.0
2,975,999 - Dsui_2804 0.65 -0.3
2,976,163 - Dsui_2804 0.76 -0.3
2,976,168 - Dsui_2804 0.76 -0.8
2,976,410 + -0.2
2,976,507 + -0.2
2,976,537 - -0.4
2,976,539 + +0.8
2,976,539 + -0.2
2,976,819 - Dsui_2805 0.25 -0.8
2,976,963 - Dsui_2805 0.42 -2.4
2,977,097 - Dsui_2805 0.57 -0.8
2,977,433 + -1.5
2,977,433 + -0.2
2,977,441 - -1.2
2,977,441 - -0.2
2,977,451 - -2.2
2,977,487 + +0.8
2,977,490 - +0.8
2,977,518 - -0.4
2,977,567 - +0.8
2,977,615 - +0.8
2,977,667 + -0.2
2,977,687 - +0.8
2,977,736 + +0.8
2,977,867 - Dsui_2806 0.11 -0.8
2,978,097 - Dsui_2806 0.19 -1.2
2,978,228 + +0.8
2,978,234 - Dsui_2806 0.23 -0.2
2,978,281 - +0.8

Or see this region's nucleotide sequence