Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2755 and Dsui_2756 are separated by 89 nucleotides Dsui_2756 and Dsui_2757 are separated by 3 nucleotides Dsui_2757 and Dsui_2758 are separated by 213 nucleotides
Dsui_2755: Dsui_2755 - hypothetical protein, at 2,915,689 to 2,915,889
_2755
Dsui_2756: Dsui_2756 - hypothetical protein, at 2,915,979 to 2,916,593
_2756
Dsui_2757: Dsui_2757 - spermidine synthase, at 2,916,597 to 2,917,403
_2757
Dsui_2758: Dsui_2758 - putative SAM-dependent methyltransferase, at 2,917,617 to 2,918,633
_2758
Position (kb)
2916
2917
2918 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2915.639 kb on - strand at 2915.963 kb on - strand at 2915.992 kb on + strand at 2916.035 kb on - strand at 2916.157 kb on + strand, within Dsui_2756 at 2916.478 kb on + strand, within Dsui_2756 at 2916.505 kb on + strand, within Dsui_2756 at 2916.621 kb on - strand at 2916.625 kb on + strand at 2916.627 kb on - strand at 2916.690 kb on + strand, within Dsui_2757 at 2916.714 kb on + strand, within Dsui_2757 at 2916.714 kb on + strand, within Dsui_2757 at 2916.722 kb on - strand at 2916.722 kb on - strand at 2916.854 kb on - strand at 2916.858 kb on + strand, within Dsui_2757 at 2916.999 kb on + strand, within Dsui_2757 at 2917.061 kb on + strand, within Dsui_2757 at 2917.114 kb on + strand at 2917.157 kb on + strand, within Dsui_2757 at 2917.157 kb on + strand, within Dsui_2757 at 2917.203 kb on - strand at 2917.449 kb on + strand at 2917.603 kb on + strand at 2917.603 kb on + strand at 2917.618 kb on + strand at 2917.705 kb on - strand at 2917.832 kb on + strand, within Dsui_2758 at 2918.123 kb on + strand, within Dsui_2758 at 2918.238 kb on - strand, within Dsui_2758 at 2918.276 kb on + strand, within Dsui_2758 at 2918.276 kb on + strand, within Dsui_2758 at 2918.325 kb on - strand, within Dsui_2758
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 2,915,639 - -0.2 2,915,963 - -0.2 2,915,992 + -1.8 2,916,035 - -0.8 2,916,157 + Dsui_2756 0.29 -1.2 2,916,478 + Dsui_2756 0.81 -3.2 2,916,505 + Dsui_2756 0.86 -2.0 2,916,621 - -0.2 2,916,625 + -1.1 2,916,627 - -0.2 2,916,690 + Dsui_2757 0.12 -0.5 2,916,714 + Dsui_2757 0.14 -2.7 2,916,714 + Dsui_2757 0.14 -2.0 2,916,722 - -0.8 2,916,722 - +0.8 2,916,854 - +0.8 2,916,858 + Dsui_2757 0.32 -1.2 2,916,999 + Dsui_2757 0.50 -0.2 2,917,061 + Dsui_2757 0.57 -0.8 2,917,114 + +0.8 2,917,157 + Dsui_2757 0.69 +0.8 2,917,157 + Dsui_2757 0.69 +0.8 2,917,203 - +0.8 2,917,449 + +0.8 2,917,603 + -2.2 2,917,603 + -2.9 2,917,618 + -1.6 2,917,705 - +0.8 2,917,832 + Dsui_2758 0.21 -1.7 2,918,123 + Dsui_2758 0.50 -2.7 2,918,238 - Dsui_2758 0.61 -0.2 2,918,276 + Dsui_2758 0.65 -0.2 2,918,276 + Dsui_2758 0.65 -1.1 2,918,325 - Dsui_2758 0.70 -0.2
Or see this region's nucleotide sequence