Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2740 and Dsui_2741 are separated by 11 nucleotides Dsui_2741 and Dsui_2742 are separated by 25 nucleotides Dsui_2742 and Dsui_2743 are separated by 443 nucleotides
Dsui_2740: Dsui_2740 - putative integral membrane protein, at 2,894,961 to 2,895,698
_2740
Dsui_2741: Dsui_2741 - PAS domain S-box, at 2,895,710 to 2,896,276
_2741
Dsui_2742: Dsui_2742 - molecular chaperone, at 2,896,302 to 2,897,567
_2742
Dsui_2743: Dsui_2743 - Integral membrane protein CcmA involved in cell shape determination, at 2,898,011 to 2,898,619
_2743
Position (kb)
2896
2897
2898 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2895.343 kb on + strand at 2895.441 kb on + strand at 2895.446 kb on + strand, within Dsui_2740 at 2895.494 kb on - strand at 2895.516 kb on - strand at 2895.607 kb on + strand, within Dsui_2740 at 2895.658 kb on - strand at 2895.673 kb on + strand at 2895.704 kb on + strand at 2895.712 kb on - strand at 2895.735 kb on + strand at 2895.744 kb on + strand at 2895.759 kb on + strand at 2895.784 kb on + strand, within Dsui_2741 at 2895.859 kb on + strand, within Dsui_2741 at 2895.864 kb on - strand at 2895.883 kb on - strand, within Dsui_2741 at 2895.944 kb on + strand, within Dsui_2741 at 2895.944 kb on + strand, within Dsui_2741 at 2895.944 kb on + strand, within Dsui_2741 at 2895.953 kb on - strand, within Dsui_2741 at 2895.957 kb on - strand at 2895.957 kb on - strand, within Dsui_2741 at 2896.043 kb on - strand, within Dsui_2741 at 2896.220 kb on - strand at 2896.251 kb on - strand at 2896.269 kb on - strand at 2896.278 kb on - strand at 2896.329 kb on + strand at 2896.383 kb on + strand at 2896.396 kb on - strand at 2896.512 kb on - strand, within Dsui_2742 at 2896.536 kb on - strand, within Dsui_2742 at 2896.536 kb on - strand, within Dsui_2742 at 2896.606 kb on - strand, within Dsui_2742 at 2896.606 kb on - strand, within Dsui_2742 at 2896.606 kb on - strand, within Dsui_2742 at 2896.627 kb on + strand, within Dsui_2742 at 2896.635 kb on - strand, within Dsui_2742 at 2896.801 kb on - strand, within Dsui_2742 at 2896.838 kb on - strand, within Dsui_2742 at 2896.875 kb on + strand at 2897.131 kb on - strand, within Dsui_2742 at 2897.133 kb on - strand, within Dsui_2742 at 2897.187 kb on + strand, within Dsui_2742 at 2897.280 kb on - strand, within Dsui_2742 at 2897.297 kb on - strand, within Dsui_2742 at 2897.325 kb on + strand at 2897.410 kb on - strand, within Dsui_2742 at 2897.435 kb on - strand, within Dsui_2742 at 2897.470 kb on - strand at 2897.521 kb on - strand at 2897.814 kb on + strand at 2897.873 kb on + strand at 2898.269 kb on - strand at 2898.446 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 2,895,343 + -0.3 2,895,441 + +0.7 2,895,446 + Dsui_2740 0.66 -1.6 2,895,494 - +0.7 2,895,516 - +0.7 2,895,607 + Dsui_2740 0.88 -2.3 2,895,658 - +0.7 2,895,673 + +0.7 2,895,704 + -0.9 2,895,712 - -0.9 2,895,735 + -0.3 2,895,744 + -1.6 2,895,759 + +0.7 2,895,784 + Dsui_2741 0.13 -2.1 2,895,859 + Dsui_2741 0.26 +0.7 2,895,864 - +0.7 2,895,883 - Dsui_2741 0.31 +0.7 2,895,944 + Dsui_2741 0.41 +0.7 2,895,944 + Dsui_2741 0.41 -0.3 2,895,944 + Dsui_2741 0.41 +0.7 2,895,953 - Dsui_2741 0.43 -0.3 2,895,957 - +0.7 2,895,957 - Dsui_2741 0.44 -1.6 2,896,043 - Dsui_2741 0.59 -1.5 2,896,220 - -0.3 2,896,251 - -1.5 2,896,269 - -0.7 2,896,278 - +0.2 2,896,329 + -0.3 2,896,383 + +0.7 2,896,396 - -0.2 2,896,512 - Dsui_2742 0.17 +0.4 2,896,536 - Dsui_2742 0.18 +0.1 2,896,536 - Dsui_2742 0.18 -0.2 2,896,606 - Dsui_2742 0.24 +0.7 2,896,606 - Dsui_2742 0.24 -0.1 2,896,606 - Dsui_2742 0.24 +0.7 2,896,627 + Dsui_2742 0.26 -1.3 2,896,635 - Dsui_2742 0.26 -0.0 2,896,801 - Dsui_2742 0.39 +0.1 2,896,838 - Dsui_2742 0.42 +0.8 2,896,875 + +0.7 2,897,131 - Dsui_2742 0.65 -0.1 2,897,133 - Dsui_2742 0.66 -0.3 2,897,187 + Dsui_2742 0.70 -3.2 2,897,280 - Dsui_2742 0.77 +0.4 2,897,297 - Dsui_2742 0.79 +0.3 2,897,325 + -0.3 2,897,410 - Dsui_2742 0.88 -0.3 2,897,435 - Dsui_2742 0.89 -0.9 2,897,470 - +1.1 2,897,521 - +0.6 2,897,814 + -0.3 2,897,873 + +0.7 2,898,269 - +0.7 2,898,446 + +0.7
Or see this region's nucleotide sequence