Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2463 and Dsui_2464 are separated by 158 nucleotides Dsui_2464 and Dsui_2465 overlap by 4 nucleotides Dsui_2465 and Dsui_2466 are separated by 29 nucleotides
Dsui_2463: Dsui_2463 - pyridoxine 5''-phosphate synthase, at 2,620,425 to 2,621,177
_2463
Dsui_2464: Dsui_2464 - holo-(acyl-carrier-protein) synthase, at 2,621,336 to 2,621,725
_2464
Dsui_2465: Dsui_2465 - beta-glucosidase-like glycosyl hydrolase, at 2,621,722 to 2,622,747
_2465
Dsui_2466: Dsui_2466 - ATP dependent DNA ligase-like protein, at 2,622,777 to 2,623,622
_2466
Position (kb)
2621
2622
2623 Strain fitness (log2 ratio)
-2
-1
0
1 at 2621.187 kb on - strand at 2621.188 kb on + strand at 2621.211 kb on + strand at 2621.211 kb on + strand at 2621.246 kb on + strand at 2621.258 kb on + strand at 2621.258 kb on + strand at 2621.258 kb on + strand at 2621.258 kb on + strand at 2621.258 kb on + strand at 2621.266 kb on - strand at 2621.266 kb on - strand at 2621.266 kb on - strand at 2621.267 kb on + strand at 2621.316 kb on - strand at 2621.778 kb on + strand at 2621.803 kb on + strand at 2621.811 kb on - strand at 2621.828 kb on + strand, within Dsui_2465 at 2621.868 kb on + strand, within Dsui_2465 at 2621.897 kb on - strand, within Dsui_2465 at 2621.897 kb on - strand at 2621.897 kb on - strand, within Dsui_2465 at 2622.046 kb on + strand, within Dsui_2465 at 2622.053 kb on - strand at 2622.209 kb on + strand, within Dsui_2465 at 2622.209 kb on + strand at 2622.272 kb on - strand, within Dsui_2465 at 2622.273 kb on - strand, within Dsui_2465 at 2622.520 kb on - strand, within Dsui_2465 at 2622.536 kb on - strand, within Dsui_2465 at 2622.836 kb on + strand at 2622.836 kb on + strand at 2622.844 kb on - strand at 2622.931 kb on + strand at 2623.083 kb on + strand, within Dsui_2466 at 2623.126 kb on + strand, within Dsui_2466 at 2623.236 kb on - strand at 2623.282 kb on - strand at 2623.485 kb on - strand at 2623.570 kb on + strand at 2623.577 kb on - strand at 2623.605 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 2,621,187 - +0.6 2,621,188 + +0.3 2,621,211 + +0.2 2,621,211 + -0.1 2,621,246 + +0.3 2,621,258 + -0.3 2,621,258 + -0.7 2,621,258 + -0.4 2,621,258 + +0.8 2,621,258 + -0.4 2,621,266 - -0.4 2,621,266 - -2.4 2,621,266 - +0.6 2,621,267 + -0.6 2,621,316 - +0.6 2,621,778 + -1.3 2,621,803 + -0.8 2,621,811 - +0.6 2,621,828 + Dsui_2465 0.10 -0.6 2,621,868 + Dsui_2465 0.14 -1.4 2,621,897 - Dsui_2465 0.17 +0.6 2,621,897 - -0.4 2,621,897 - Dsui_2465 0.17 -1.4 2,622,046 + Dsui_2465 0.32 -0.9 2,622,053 - -0.4 2,622,209 + Dsui_2465 0.47 -1.4 2,622,209 + +0.6 2,622,272 - Dsui_2465 0.54 -0.9 2,622,273 - Dsui_2465 0.54 +0.6 2,622,520 - Dsui_2465 0.78 -1.4 2,622,536 - Dsui_2465 0.79 -0.9 2,622,836 + +0.6 2,622,836 + -2.3 2,622,844 - -1.0 2,622,931 + -0.4 2,623,083 + Dsui_2466 0.36 -1.0 2,623,126 + Dsui_2466 0.41 -1.0 2,623,236 - -1.7 2,623,282 - +0.6 2,623,485 - +0.6 2,623,570 + -0.4 2,623,577 - +0.6 2,623,605 - -1.4
Or see this region's nucleotide sequence