Strain Fitness in Dechlorosoma suillum PS around Dsui_2424

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2423 and Dsui_2424 are separated by 5 nucleotidesDsui_2424 and Dsui_2425 are separated by 39 nucleotides Dsui_2423: Dsui_2423 - GTP-binding protein TypA/BipA, at 2,581,928 to 2,583,742 _2423 Dsui_2424: Dsui_2424 - hypothetical protein, at 2,583,748 to 2,583,906 _2424 Dsui_2425: Dsui_2425 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,583,946 to 2,585,865 _2425 Position (kb) 2583 2584Strain fitness (log2 ratio) -3 -2 -1 0 1at 2583.857 kb on - strand, within Dsui_2424at 2583.984 kb on + strandat 2584.070 kb on + strandat 2584.091 kb on - strandat 2584.170 kb on - strand, within Dsui_2425at 2584.230 kb on - strand, within Dsui_2425at 2584.332 kb on + strand, within Dsui_2425at 2584.353 kb on - strand, within Dsui_2425at 2584.516 kb on + strand, within Dsui_2425at 2584.532 kb on - strand, within Dsui_2425at 2584.661 kb on - strand, within Dsui_2425at 2584.760 kb on + strandat 2584.766 kb on - strand, within Dsui_2425at 2584.768 kb on - strand, within Dsui_2425

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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2,583,857 - Dsui_2424 0.69 -2.3
2,583,984 + -0.3
2,584,070 + -0.3
2,584,091 - -3.0
2,584,170 - Dsui_2425 0.12 -1.4
2,584,230 - Dsui_2425 0.15 -0.1
2,584,332 + Dsui_2425 0.20 +0.7
2,584,353 - Dsui_2425 0.21 -1.6
2,584,516 + Dsui_2425 0.30 +0.7
2,584,532 - Dsui_2425 0.31 -0.5
2,584,661 - Dsui_2425 0.37 -0.2
2,584,760 + +0.7
2,584,766 - Dsui_2425 0.43 -0.9
2,584,768 - Dsui_2425 0.43 -0.1

Or see this region's nucleotide sequence