Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2293 and Dsui_2294 are separated by 51 nucleotides Dsui_2294 and Dsui_2295 are separated by 169 nucleotides Dsui_2295 and Dsui_2296 are separated by 304 nucleotides
Dsui_2293: Dsui_2293 - poly(3-hydroxyalkanoate) synthetase, at 2,446,699 to 2,448,483
_2293
Dsui_2294: Dsui_2294 - phasin family protein, at 2,448,535 to 2,449,032
_2294
Dsui_2295: Dsui_2295 - transcriptional regulator, at 2,449,202 to 2,449,843
_2295
Dsui_2296: Dsui_2296 - chemotaxis protein, at 2,450,148 to 2,450,747
_2296
Position (kb)
2449
2450 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2448.331 kb on - strand at 2448.367 kb on + strand at 2448.384 kb on - strand at 2448.478 kb on + strand at 2448.487 kb on - strand at 2448.603 kb on - strand, within Dsui_2294 at 2448.797 kb on + strand, within Dsui_2294 at 2448.803 kb on - strand, within Dsui_2294 at 2448.804 kb on - strand, within Dsui_2294 at 2448.805 kb on - strand, within Dsui_2294 at 2448.805 kb on - strand, within Dsui_2294 at 2448.968 kb on - strand, within Dsui_2294 at 2449.042 kb on - strand at 2449.162 kb on + strand at 2449.263 kb on + strand at 2449.506 kb on + strand, within Dsui_2295 at 2449.890 kb on - strand at 2449.898 kb on + strand at 2450.150 kb on - strand at 2450.187 kb on + strand at 2450.214 kb on + strand, within Dsui_2296 at 2450.420 kb on + strand, within Dsui_2296 at 2450.487 kb on + strand, within Dsui_2296 at 2450.563 kb on + strand, within Dsui_2296 at 2450.674 kb on - strand at 2450.741 kb on + strand at 2450.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 2,448,331 - -1.1 2,448,367 + +0.9 2,448,384 - +0.9 2,448,478 + +0.9 2,448,487 - -0.7 2,448,603 - Dsui_2294 0.14 -0.7 2,448,797 + Dsui_2294 0.53 -0.1 2,448,803 - Dsui_2294 0.54 -0.1 2,448,804 - Dsui_2294 0.54 -1.1 2,448,805 - Dsui_2294 0.54 -0.1 2,448,805 - Dsui_2294 0.54 +0.9 2,448,968 - Dsui_2294 0.87 +0.9 2,449,042 - +0.9 2,449,162 + +0.9 2,449,263 + -0.1 2,449,506 + Dsui_2295 0.47 -3.3 2,449,890 - +0.9 2,449,898 + +0.9 2,450,150 - -0.1 2,450,187 + -0.9 2,450,214 + Dsui_2296 0.11 -0.5 2,450,420 + Dsui_2296 0.45 -0.3 2,450,487 + Dsui_2296 0.56 -0.8 2,450,563 + Dsui_2296 0.69 +0.7 2,450,674 - +0.9 2,450,741 + -0.4 2,450,839 - +0.9
Or see this region's nucleotide sequence