Strain Fitness in Dechlorosoma suillum PS around Dsui_2254

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2253 and Dsui_2254 are separated by 74 nucleotidesDsui_2254 and Dsui_2255 are separated by 53 nucleotides Dsui_2253: Dsui_2253 - benzoate transporter, at 2,401,928 to 2,403,154 _2253 Dsui_2254: Dsui_2254 - glycine/serine hydroxymethyltransferase, at 2,403,229 to 2,404,531 _2254 Dsui_2255: Dsui_2255 - cAMP-binding protein, at 2,404,585 to 2,405,301 _2255 Position (kb) 2403 2404 2405Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2402.241 kb on - strandat 2402.255 kb on - strand, within Dsui_2253at 2402.407 kb on + strandat 2402.580 kb on - strandat 2402.677 kb on - strandat 2402.835 kb on + strandat 2402.904 kb on - strandat 2402.921 kb on - strand, within Dsui_2253at 2402.921 kb on - strandat 2402.921 kb on - strandat 2402.954 kb on + strandat 2403.015 kb on + strandat 2403.381 kb on - strandat 2403.412 kb on - strand, within Dsui_2254at 2403.432 kb on + strandat 2403.516 kb on + strandat 2403.526 kb on + strandat 2403.568 kb on - strandat 2403.596 kb on - strandat 2403.656 kb on + strandat 2403.875 kb on + strand, within Dsui_2254at 2403.896 kb on + strand, within Dsui_2254at 2403.949 kb on - strandat 2403.987 kb on - strand, within Dsui_2254at 2404.056 kb on - strandat 2404.075 kb on - strand, within Dsui_2254at 2404.075 kb on - strand, within Dsui_2254at 2404.123 kb on + strand, within Dsui_2254at 2404.183 kb on - strand, within Dsui_2254at 2404.246 kb on - strand, within Dsui_2254at 2404.251 kb on - strand, within Dsui_2254at 2404.265 kb on + strand, within Dsui_2254at 2404.274 kb on - strand, within Dsui_2254at 2404.276 kb on + strand, within Dsui_2254at 2404.287 kb on + strand, within Dsui_2254at 2404.295 kb on - strandat 2404.539 kb on - strandat 2404.607 kb on + strandat 2404.615 kb on - strandat 2404.615 kb on - strandat 2404.615 kb on - strandat 2404.677 kb on + strand, within Dsui_2255at 2404.685 kb on - strand, within Dsui_2255at 2404.829 kb on - strand, within Dsui_2255at 2404.846 kb on - strand, within Dsui_2255at 2404.868 kb on + strandat 2404.894 kb on + strand, within Dsui_2255at 2404.894 kb on + strandat 2404.902 kb on - strand, within Dsui_2255at 2404.953 kb on - strand, within Dsui_2255at 2404.991 kb on + strandat 2405.009 kb on + strand, within Dsui_2255at 2405.199 kb on + strand, within Dsui_2255at 2405.222 kb on + strand, within Dsui_2255at 2405.273 kb on + strandat 2405.278 kb on + strandat 2405.278 kb on + strandat 2405.286 kb on - strandat 2405.286 kb on - strandat 2405.311 kb on + strandat 2405.311 kb on + strandat 2405.378 kb on + strandat 2405.419 kb on - strandat 2405.419 kb on - strandat 2405.488 kb on + strandat 2405.488 kb on + strandat 2405.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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2,402,241 - -0.1
2,402,255 - Dsui_2253 0.27 -1.4
2,402,407 + -1.1
2,402,580 - +0.9
2,402,677 - +0.9
2,402,835 + -1.9
2,402,904 - +0.9
2,402,921 - Dsui_2253 0.81 +0.9
2,402,921 - -0.1
2,402,921 - +0.9
2,402,954 + +0.9
2,403,015 + +0.9
2,403,381 - -0.1
2,403,412 - Dsui_2254 0.14 -0.1
2,403,432 + +0.9
2,403,516 + -1.4
2,403,526 + -0.1
2,403,568 - -1.4
2,403,596 - +0.9
2,403,656 + +0.9
2,403,875 + Dsui_2254 0.50 -0.1
2,403,896 + Dsui_2254 0.51 -1.1
2,403,949 - -0.1
2,403,987 - Dsui_2254 0.58 +1.9
2,404,056 - +0.9
2,404,075 - Dsui_2254 0.65 -0.7
2,404,075 - Dsui_2254 0.65 -0.1
2,404,123 + Dsui_2254 0.69 -0.7
2,404,183 - Dsui_2254 0.73 -0.1
2,404,246 - Dsui_2254 0.78 -1.7
2,404,251 - Dsui_2254 0.78 -1.4
2,404,265 + Dsui_2254 0.80 +0.9
2,404,274 - Dsui_2254 0.80 -1.4
2,404,276 + Dsui_2254 0.80 +0.9
2,404,287 + Dsui_2254 0.81 -1.1
2,404,295 - -0.1
2,404,539 - -0.7
2,404,607 + -0.1
2,404,615 - -1.0
2,404,615 - -0.4
2,404,615 - -1.9
2,404,677 + Dsui_2255 0.13 +0.9
2,404,685 - Dsui_2255 0.14 -0.7
2,404,829 - Dsui_2255 0.34 -0.5
2,404,846 - Dsui_2255 0.36 +0.1
2,404,868 + +0.9
2,404,894 + Dsui_2255 0.43 +0.9
2,404,894 + +0.9
2,404,902 - Dsui_2255 0.44 -0.7
2,404,953 - Dsui_2255 0.51 -0.8
2,404,991 + +0.9
2,405,009 + Dsui_2255 0.59 -1.4
2,405,199 + Dsui_2255 0.86 -2.1
2,405,222 + Dsui_2255 0.89 +0.9
2,405,273 + +0.9
2,405,278 + -0.1
2,405,278 + -2.1
2,405,286 - -0.4
2,405,286 - -0.2
2,405,311 + -0.1
2,405,311 + -2.9
2,405,378 + -0.9
2,405,419 - -0.5
2,405,419 - -0.1
2,405,488 + -0.7
2,405,488 + -0.1
2,405,489 - -0.7

Or see this region's nucleotide sequence