Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2229 and Dsui_2230 are separated by 95 nucleotides Dsui_2230 and Dsui_2231 overlap by 81 nucleotides
Dsui_2229: Dsui_2229 - transcriptional regulator, at 2,369,905 to 2,370,780
_2229
Dsui_2230: Dsui_2230 - conserved hypothetical integral membrane protein, at 2,370,876 to 2,371,910
_2230
Dsui_2231: Dsui_2231 - arabinose efflux permease family protein, at 2,371,830 to 2,373,104
_2231
Position (kb)
2370
2371
2372 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2370.078 kb on + strand at 2370.078 kb on + strand at 2370.110 kb on + strand at 2370.118 kb on - strand, within Dsui_2229 at 2370.118 kb on - strand, within Dsui_2229 at 2370.118 kb on - strand, within Dsui_2229 at 2370.163 kb on - strand, within Dsui_2229 at 2370.168 kb on - strand, within Dsui_2229 at 2370.284 kb on - strand, within Dsui_2229 at 2370.292 kb on - strand at 2370.396 kb on - strand, within Dsui_2229 at 2370.401 kb on - strand, within Dsui_2229 at 2370.484 kb on + strand at 2370.510 kb on - strand, within Dsui_2229 at 2370.515 kb on - strand, within Dsui_2229 at 2370.625 kb on - strand, within Dsui_2229 at 2370.642 kb on - strand, within Dsui_2229 at 2370.672 kb on - strand, within Dsui_2229 at 2370.672 kb on - strand, within Dsui_2229 at 2370.691 kb on + strand at 2371.072 kb on + strand, within Dsui_2230 at 2371.085 kb on - strand at 2371.214 kb on - strand at 2371.247 kb on - strand at 2371.247 kb on - strand at 2371.468 kb on + strand at 2371.527 kb on - strand at 2371.672 kb on - strand at 2371.680 kb on + strand at 2371.759 kb on - strand, within Dsui_2230 at 2371.769 kb on - strand, within Dsui_2230 at 2371.786 kb on + strand, within Dsui_2230 at 2371.788 kb on - strand, within Dsui_2230 at 2371.887 kb on - strand at 2371.923 kb on - strand at 2371.923 kb on - strand at 2372.008 kb on - strand, within Dsui_2231 at 2372.023 kb on - strand at 2372.033 kb on - strand, within Dsui_2231 at 2372.100 kb on + strand, within Dsui_2231 at 2372.105 kb on + strand at 2372.119 kb on - strand, within Dsui_2231 at 2372.205 kb on + strand at 2372.248 kb on - strand at 2372.319 kb on + strand, within Dsui_2231 at 2372.330 kb on + strand at 2372.330 kb on + strand at 2372.338 kb on - strand, within Dsui_2231 at 2372.338 kb on - strand, within Dsui_2231 at 2372.493 kb on + strand, within Dsui_2231 at 2372.572 kb on + strand at 2372.635 kb on + strand, within Dsui_2231 at 2372.635 kb on - strand, within Dsui_2231 at 2372.688 kb on - strand, within Dsui_2231 at 2372.698 kb on - strand at 2372.698 kb on - strand, within Dsui_2231 at 2372.749 kb on + strand at 2372.750 kb on - strand, within Dsui_2231 at 2372.767 kb on - strand, within Dsui_2231 at 2372.797 kb on - strand, within Dsui_2231 at 2372.814 kb on + strand, within Dsui_2231 at 2372.817 kb on - strand, within Dsui_2231 at 2372.882 kb on + strand at 2372.907 kb on + strand, within Dsui_2231
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 2,370,078 + -0.1 2,370,078 + +0.9 2,370,110 + -0.1 2,370,118 - Dsui_2229 0.24 +0.0 2,370,118 - Dsui_2229 0.24 +0.1 2,370,118 - Dsui_2229 0.24 -0.8 2,370,163 - Dsui_2229 0.29 -0.1 2,370,168 - Dsui_2229 0.30 -1.6 2,370,284 - Dsui_2229 0.43 -1.3 2,370,292 - -1.4 2,370,396 - Dsui_2229 0.56 -0.4 2,370,401 - Dsui_2229 0.57 -1.4 2,370,484 + +0.9 2,370,510 - Dsui_2229 0.69 -1.1 2,370,515 - Dsui_2229 0.70 -1.8 2,370,625 - Dsui_2229 0.82 -0.1 2,370,642 - Dsui_2229 0.84 -0.7 2,370,672 - Dsui_2229 0.88 +1.9 2,370,672 - Dsui_2229 0.88 +0.6 2,370,691 + +0.9 2,371,072 + Dsui_2230 0.19 -2.7 2,371,085 - -0.1 2,371,214 - +0.9 2,371,247 - +0.9 2,371,247 - +0.9 2,371,468 + -1.1 2,371,527 - +0.9 2,371,672 - -0.1 2,371,680 + +0.9 2,371,759 - Dsui_2230 0.85 -1.1 2,371,769 - Dsui_2230 0.86 -0.7 2,371,786 + Dsui_2230 0.88 +0.9 2,371,788 - Dsui_2230 0.88 -0.1 2,371,887 - -1.2 2,371,923 - +0.9 2,371,923 - -0.5 2,372,008 - Dsui_2231 0.14 +0.9 2,372,023 - +0.9 2,372,033 - Dsui_2231 0.16 +1.3 2,372,100 + Dsui_2231 0.21 -1.4 2,372,105 + +0.9 2,372,119 - Dsui_2231 0.23 -1.7 2,372,205 + -0.7 2,372,248 - +0.9 2,372,319 + Dsui_2231 0.38 +0.9 2,372,330 + -0.1 2,372,330 + +0.9 2,372,338 - Dsui_2231 0.40 -1.1 2,372,338 - Dsui_2231 0.40 +0.5 2,372,493 + Dsui_2231 0.52 -0.1 2,372,572 + +0.9 2,372,635 + Dsui_2231 0.63 -0.7 2,372,635 - Dsui_2231 0.63 -1.1 2,372,688 - Dsui_2231 0.67 -1.4 2,372,698 - +0.9 2,372,698 - Dsui_2231 0.68 +0.9 2,372,749 + -0.1 2,372,750 - Dsui_2231 0.72 -1.4 2,372,767 - Dsui_2231 0.73 -0.7 2,372,797 - Dsui_2231 0.76 -2.1 2,372,814 + Dsui_2231 0.77 -0.1 2,372,817 - Dsui_2231 0.77 -2.5 2,372,882 + -1.1 2,372,907 + Dsui_2231 0.84 -1.1
Or see this region's nucleotide sequence