Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2148 and Dsui_2149 are separated by 201 nucleotides Dsui_2149 and Dsui_2150 are separated by 4 nucleotides
Dsui_2148: Dsui_2148 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,275,744 to 2,278,623
_2148
Dsui_2149: Dsui_2149 - DNA helicase, Rad3, at 2,278,825 to 2,280,777
_2149
Dsui_2150: Dsui_2150 - hypothetical protein, at 2,280,782 to 2,282,134
_2150
Position (kb)
2278
2279
2280
2281 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2277.888 kb on + strand at 2278.089 kb on + strand, within Dsui_2148 at 2278.125 kb on + strand, within Dsui_2148 at 2278.191 kb on + strand at 2278.307 kb on + strand at 2278.336 kb on - strand at 2278.363 kb on - strand at 2278.543 kb on - strand at 2278.565 kb on - strand at 2278.565 kb on - strand at 2278.631 kb on - strand at 2278.664 kb on + strand at 2279.015 kb on - strand at 2279.136 kb on + strand, within Dsui_2149 at 2279.230 kb on + strand, within Dsui_2149 at 2279.290 kb on + strand, within Dsui_2149 at 2279.362 kb on + strand, within Dsui_2149 at 2279.362 kb on + strand, within Dsui_2149 at 2279.370 kb on - strand at 2279.370 kb on - strand at 2279.593 kb on + strand, within Dsui_2149 at 2279.656 kb on - strand at 2279.664 kb on + strand, within Dsui_2149 at 2279.708 kb on - strand at 2279.805 kb on + strand, within Dsui_2149 at 2279.805 kb on + strand, within Dsui_2149 at 2279.805 kb on + strand, within Dsui_2149 at 2279.848 kb on - strand at 2279.918 kb on + strand, within Dsui_2149 at 2279.918 kb on + strand, within Dsui_2149 at 2279.925 kb on + strand, within Dsui_2149 at 2280.019 kb on - strand at 2280.153 kb on - strand at 2280.353 kb on - strand, within Dsui_2149 at 2280.464 kb on + strand, within Dsui_2149 at 2280.576 kb on + strand, within Dsui_2149 at 2280.654 kb on - strand at 2280.786 kb on - strand at 2280.868 kb on - strand at 2280.870 kb on + strand at 2280.881 kb on + strand at 2280.881 kb on + strand at 2280.889 kb on - strand at 2281.146 kb on + strand, within Dsui_2150 at 2281.382 kb on + strand, within Dsui_2150 at 2281.490 kb on + strand, within Dsui_2150 at 2281.604 kb on - strand, within Dsui_2150 at 2281.673 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 2,277,888 + +0.9 2,278,089 + Dsui_2148 0.81 +0.9 2,278,125 + Dsui_2148 0.83 -0.1 2,278,191 + +0.9 2,278,307 + +0.9 2,278,336 - -0.2 2,278,363 - -0.2 2,278,543 - +0.2 2,278,565 - -1.1 2,278,565 - -0.5 2,278,631 - -0.7 2,278,664 + +0.9 2,279,015 - +1.9 2,279,136 + Dsui_2149 0.16 -1.3 2,279,230 + Dsui_2149 0.21 -2.3 2,279,290 + Dsui_2149 0.24 -2.2 2,279,362 + Dsui_2149 0.27 -2.6 2,279,362 + Dsui_2149 0.27 -1.9 2,279,370 - +0.9 2,279,370 - +0.9 2,279,593 + Dsui_2149 0.39 -2.7 2,279,656 - +0.9 2,279,664 + Dsui_2149 0.43 -2.2 2,279,708 - +0.9 2,279,805 + Dsui_2149 0.50 -2.8 2,279,805 + Dsui_2149 0.50 -1.8 2,279,805 + Dsui_2149 0.50 -1.9 2,279,848 - -0.6 2,279,918 + Dsui_2149 0.56 -2.0 2,279,918 + Dsui_2149 0.56 -3.0 2,279,925 + Dsui_2149 0.56 -1.1 2,280,019 - +0.9 2,280,153 - +0.9 2,280,353 - Dsui_2149 0.78 -0.1 2,280,464 + Dsui_2149 0.84 -2.2 2,280,576 + Dsui_2149 0.90 -2.7 2,280,654 - +0.9 2,280,786 - -0.1 2,280,868 - +0.9 2,280,870 + -0.5 2,280,881 + -0.3 2,280,881 + +0.4 2,280,889 - +0.9 2,281,146 + Dsui_2150 0.27 +0.4 2,281,382 + Dsui_2150 0.44 -1.3 2,281,490 + Dsui_2150 0.52 -0.5 2,281,604 - Dsui_2150 0.61 -1.1 2,281,673 - +0.9
Or see this region's nucleotide sequence