Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1873 and Dsui_1874 overlap by 1 nucleotides Dsui_1874 and Dsui_1875 are separated by 66 nucleotides Dsui_1875 and Dsui_1876 are separated by 146 nucleotides Dsui_1876 and Dsui_1877 are separated by 97 nucleotides
Dsui_1873: Dsui_1873 - transcriptional regulator, at 1,972,432 to 1,973,046
_1873
Dsui_1874: Dsui_1874 - hypothetical protein, at 1,973,046 to 1,973,378
_1874
Dsui_1875: Dsui_1875 - hypothetical protein, at 1,973,445 to 1,973,618
_1875
Dsui_1876: Dsui_1876 - transcriptional regulator, at 1,973,765 to 1,974,349
_1876
Dsui_1877: Dsui_1877 - NADH:flavin oxidoreductase, at 1,974,447 to 1,975,529
_1877
Position (kb)
1973
1974
1975 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1972.859 kb on + strand, within Dsui_1873 at 1972.925 kb on + strand, within Dsui_1873 at 1973.055 kb on + strand at 1973.167 kb on + strand, within Dsui_1874 at 1973.167 kb on + strand, within Dsui_1874 at 1973.173 kb on + strand, within Dsui_1874 at 1973.181 kb on - strand, within Dsui_1874 at 1973.233 kb on - strand, within Dsui_1874 at 1973.270 kb on - strand, within Dsui_1874 at 1973.334 kb on - strand, within Dsui_1874 at 1973.356 kb on + strand at 1973.438 kb on + strand at 1973.526 kb on - strand, within Dsui_1875 at 1973.545 kb on - strand, within Dsui_1875 at 1973.581 kb on - strand, within Dsui_1875 at 1973.601 kb on + strand at 1973.601 kb on + strand at 1973.645 kb on - strand at 1973.828 kb on + strand, within Dsui_1876 at 1973.892 kb on + strand, within Dsui_1876 at 1974.068 kb on + strand, within Dsui_1876 at 1974.142 kb on + strand, within Dsui_1876 at 1974.147 kb on + strand, within Dsui_1876 at 1974.224 kb on + strand, within Dsui_1876 at 1974.313 kb on + strand at 1974.320 kb on + strand at 1974.367 kb on + strand at 1974.445 kb on - strand at 1974.458 kb on + strand at 1974.606 kb on + strand, within Dsui_1877 at 1974.611 kb on + strand, within Dsui_1877 at 1974.633 kb on + strand at 1974.660 kb on - strand at 1974.792 kb on + strand at 1974.800 kb on + strand, within Dsui_1877 at 1974.929 kb on - strand, within Dsui_1877 at 1975.152 kb on + strand, within Dsui_1877 at 1975.262 kb on + strand, within Dsui_1877
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 1,972,859 + Dsui_1873 0.69 -1.0 1,972,925 + Dsui_1873 0.80 -0.0 1,973,055 + +0.2 1,973,167 + Dsui_1874 0.36 -0.0 1,973,167 + Dsui_1874 0.36 -1.2 1,973,173 + Dsui_1874 0.38 -1.7 1,973,181 - Dsui_1874 0.41 +0.9 1,973,233 - Dsui_1874 0.56 -0.7 1,973,270 - Dsui_1874 0.67 -0.7 1,973,334 - Dsui_1874 0.86 -1.1 1,973,356 + -1.4 1,973,438 + -0.1 1,973,526 - Dsui_1875 0.47 -0.3 1,973,545 - Dsui_1875 0.57 -0.1 1,973,581 - Dsui_1875 0.78 -1.0 1,973,601 + -1.4 1,973,601 + -0.1 1,973,645 - +0.5 1,973,828 + Dsui_1876 0.11 -6.4 1,973,892 + Dsui_1876 0.22 -5.2 1,974,068 + Dsui_1876 0.52 -5.4 1,974,142 + Dsui_1876 0.64 -4.3 1,974,147 + Dsui_1876 0.65 -5.2 1,974,224 + Dsui_1876 0.78 -5.8 1,974,313 + -5.4 1,974,320 + -1.6 1,974,367 + -2.1 1,974,445 - +0.9 1,974,458 + +0.9 1,974,606 + Dsui_1877 0.15 -0.1 1,974,611 + Dsui_1877 0.15 -0.7 1,974,633 + +0.9 1,974,660 - +0.9 1,974,792 + +0.9 1,974,800 + Dsui_1877 0.33 -0.7 1,974,929 - Dsui_1877 0.45 -0.7 1,975,152 + Dsui_1877 0.65 +0.9 1,975,262 + Dsui_1877 0.75 -1.7
Or see this region's nucleotide sequence