Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1770 and Dsui_1771 are separated by 20 nucleotides Dsui_1771 and Dsui_1772 overlap by 4 nucleotides Dsui_1772 and Dsui_1773 overlap by 4 nucleotides
Dsui_1770: Dsui_1770 - hypothetical protein, at 1,856,235 to 1,857,332
_1770
Dsui_1771: Dsui_1771 - hypothetical protein, at 1,857,353 to 1,858,123
_1771
Dsui_1772: Dsui_1772 - type I secretion system ABC transporter, PrtD family, at 1,858,120 to 1,859,859
_1772
Dsui_1773: Dsui_1773 - type I secretion system ABC transporter, PrtD family, at 1,859,856 to 1,861,529
_1773
Position (kb)
1858
1859
1860 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1857.147 kb on - strand, within Dsui_1770 at 1857.147 kb on - strand, within Dsui_1770 at 1857.188 kb on + strand, within Dsui_1770 at 1857.276 kb on + strand at 1857.313 kb on + strand at 1857.363 kb on - strand at 1857.410 kb on - strand at 1857.410 kb on - strand at 1857.410 kb on - strand at 1857.410 kb on - strand at 1857.420 kb on - strand at 1857.460 kb on + strand, within Dsui_1771 at 1857.578 kb on + strand, within Dsui_1771 at 1857.580 kb on + strand, within Dsui_1771 at 1857.680 kb on + strand, within Dsui_1771 at 1857.701 kb on + strand, within Dsui_1771 at 1857.981 kb on - strand, within Dsui_1771 at 1858.011 kb on - strand, within Dsui_1771 at 1858.089 kb on + strand at 1858.094 kb on + strand at 1858.107 kb on - strand at 1858.142 kb on + strand at 1858.142 kb on + strand at 1858.263 kb on - strand at 1858.263 kb on - strand at 1858.347 kb on - strand, within Dsui_1772 at 1858.468 kb on - strand, within Dsui_1772 at 1858.473 kb on - strand at 1858.519 kb on - strand, within Dsui_1772 at 1858.566 kb on + strand, within Dsui_1772 at 1858.625 kb on - strand at 1858.634 kb on + strand, within Dsui_1772 at 1858.662 kb on - strand, within Dsui_1772 at 1858.840 kb on + strand, within Dsui_1772 at 1858.841 kb on + strand, within Dsui_1772 at 1858.846 kb on + strand, within Dsui_1772 at 1858.851 kb on + strand, within Dsui_1772 at 1858.923 kb on + strand, within Dsui_1772 at 1859.095 kb on - strand, within Dsui_1772 at 1859.173 kb on + strand, within Dsui_1772 at 1859.288 kb on + strand, within Dsui_1772 at 1859.339 kb on + strand, within Dsui_1772 at 1859.339 kb on + strand, within Dsui_1772 at 1859.344 kb on + strand, within Dsui_1772 at 1859.352 kb on - strand, within Dsui_1772 at 1859.352 kb on - strand, within Dsui_1772 at 1859.352 kb on - strand, within Dsui_1772 at 1859.441 kb on - strand, within Dsui_1772 at 1859.536 kb on + strand, within Dsui_1772 at 1859.604 kb on + strand, within Dsui_1772 at 1859.612 kb on - strand, within Dsui_1772 at 1859.615 kb on + strand, within Dsui_1772 at 1859.615 kb on + strand, within Dsui_1772 at 1859.638 kb on + strand, within Dsui_1772 at 1859.683 kb on - strand at 1859.760 kb on + strand at 1859.843 kb on - strand at 1859.898 kb on + strand at 1859.915 kb on - strand at 1859.920 kb on + strand at 1859.988 kb on + strand at 1859.988 kb on + strand at 1859.988 kb on + strand at 1859.998 kb on - strand at 1860.038 kb on - strand, within Dsui_1773 at 1860.234 kb on - strand, within Dsui_1773 at 1860.288 kb on - strand, within Dsui_1773 at 1860.353 kb on + strand, within Dsui_1773 at 1860.371 kb on - strand, within Dsui_1773 at 1860.399 kb on + strand, within Dsui_1773 at 1860.407 kb on - strand, within Dsui_1773 at 1860.409 kb on - strand, within Dsui_1773 at 1860.409 kb on - strand, within Dsui_1773 at 1860.432 kb on + strand, within Dsui_1773 at 1860.432 kb on + strand, within Dsui_1773 at 1860.440 kb on - strand, within Dsui_1773 at 1860.463 kb on + strand, within Dsui_1773 at 1860.508 kb on - strand, within Dsui_1773 at 1860.699 kb on + strand, within Dsui_1773 at 1860.728 kb on + strand, within Dsui_1773 at 1860.736 kb on - strand, within Dsui_1773 at 1860.736 kb on - strand, within Dsui_1773 at 1860.776 kb on - strand, within Dsui_1773 at 1860.836 kb on - strand, within Dsui_1773 at 1860.846 kb on + strand, within Dsui_1773
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 1,857,147 - Dsui_1770 0.83 +0.8 1,857,147 - Dsui_1770 0.83 -0.2 1,857,188 + Dsui_1770 0.87 -0.5 1,857,276 + +0.9 1,857,313 + -0.5 1,857,363 - +0.8 1,857,410 - -0.2 1,857,410 - +0.8 1,857,410 - +0.8 1,857,410 - -0.8 1,857,420 - +0.8 1,857,460 + Dsui_1771 0.14 +0.3 1,857,578 + Dsui_1771 0.29 +1.8 1,857,580 + Dsui_1771 0.29 -1.6 1,857,680 + Dsui_1771 0.42 -0.2 1,857,701 + Dsui_1771 0.45 -1.6 1,857,981 - Dsui_1771 0.81 +0.8 1,858,011 - Dsui_1771 0.85 -0.2 1,858,089 + -0.1 1,858,094 + -0.7 1,858,107 - +0.8 1,858,142 + -0.1 1,858,142 + +0.8 1,858,263 - -0.2 1,858,263 - +0.8 1,858,347 - Dsui_1772 0.13 -0.2 1,858,468 - Dsui_1772 0.20 -0.2 1,858,473 - +0.8 1,858,519 - Dsui_1772 0.23 +0.8 1,858,566 + Dsui_1772 0.26 +0.1 1,858,625 - +0.8 1,858,634 + Dsui_1772 0.30 -0.1 1,858,662 - Dsui_1772 0.31 -1.2 1,858,840 + Dsui_1772 0.41 -0.5 1,858,841 + Dsui_1772 0.41 +0.2 1,858,846 + Dsui_1772 0.42 +0.4 1,858,851 + Dsui_1772 0.42 +0.8 1,858,923 + Dsui_1772 0.46 +1.7 1,859,095 - Dsui_1772 0.56 -1.2 1,859,173 + Dsui_1772 0.61 -0.7 1,859,288 + Dsui_1772 0.67 +1.0 1,859,339 + Dsui_1772 0.70 -1.1 1,859,339 + Dsui_1772 0.70 +0.0 1,859,344 + Dsui_1772 0.70 +0.3 1,859,352 - Dsui_1772 0.71 -2.2 1,859,352 - Dsui_1772 0.71 -2.6 1,859,352 - Dsui_1772 0.71 -0.2 1,859,441 - Dsui_1772 0.76 -1.6 1,859,536 + Dsui_1772 0.81 +0.1 1,859,604 + Dsui_1772 0.85 -0.3 1,859,612 - Dsui_1772 0.86 +0.8 1,859,615 + Dsui_1772 0.86 -0.8 1,859,615 + Dsui_1772 0.86 -0.2 1,859,638 + Dsui_1772 0.87 +1.1 1,859,683 - +0.8 1,859,760 + -1.7 1,859,843 - -2.6 1,859,898 + -0.8 1,859,915 - +0.8 1,859,920 + -2.1 1,859,988 + +0.8 1,859,988 + -0.2 1,859,988 + -0.3 1,859,998 - -0.2 1,860,038 - Dsui_1773 0.11 -0.2 1,860,234 - Dsui_1773 0.23 +0.8 1,860,288 - Dsui_1773 0.26 +0.8 1,860,353 + Dsui_1773 0.30 +0.8 1,860,371 - Dsui_1773 0.31 -3.1 1,860,399 + Dsui_1773 0.32 -0.8 1,860,407 - Dsui_1773 0.33 -0.2 1,860,409 - Dsui_1773 0.33 -0.2 1,860,409 - Dsui_1773 0.33 -0.2 1,860,432 + Dsui_1773 0.34 +1.2 1,860,432 + Dsui_1773 0.34 +1.0 1,860,440 - Dsui_1773 0.35 +0.8 1,860,463 + Dsui_1773 0.36 +0.3 1,860,508 - Dsui_1773 0.39 -0.2 1,860,699 + Dsui_1773 0.50 -1.6 1,860,728 + Dsui_1773 0.52 +0.8 1,860,736 - Dsui_1773 0.53 +0.8 1,860,736 - Dsui_1773 0.53 +1.3 1,860,776 - Dsui_1773 0.55 -1.8 1,860,836 - Dsui_1773 0.59 -2.4 1,860,846 + Dsui_1773 0.59 -0.5
Or see this region's nucleotide sequence