Strain Fitness in Dechlorosoma suillum PS around Dsui_1735

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1733 and Dsui_1734 are separated by 19 nucleotidesDsui_1734 and Dsui_1735 are separated by 15 nucleotidesDsui_1735 and Dsui_1736 are separated by 34 nucleotidesDsui_1736 and Dsui_1737 are separated by 25 nucleotides Dsui_1733: Dsui_1733 - flagellar basal-body rod protein FlgC, at 1,822,394 to 1,822,798 _1733 Dsui_1734: Dsui_1734 - flagellar hook capping protein, at 1,822,818 to 1,823,507 _1734 Dsui_1735: Dsui_1735 - flagellar hook-basal body proteins, at 1,823,523 to 1,824,878 _1735 Dsui_1736: Dsui_1736 - flagellar basal-body rod protein FlgF, at 1,824,913 to 1,825,656 _1736 Dsui_1737: Dsui_1737 - flagellar basal-body rod protein FlgG, at 1,825,682 to 1,826,464 _1737 Position (kb) 1823 1824 1825Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1822.557 kb on + strand, within Dsui_1733at 1822.602 kb on + strand, within Dsui_1733at 1822.610 kb on - strand, within Dsui_1733at 1822.620 kb on - strandat 1822.657 kb on + strand, within Dsui_1733at 1822.677 kb on + strand, within Dsui_1733at 1822.677 kb on + strand, within Dsui_1733at 1822.686 kb on + strand, within Dsui_1733at 1822.694 kb on - strandat 1822.735 kb on - strand, within Dsui_1733at 1822.787 kb on - strandat 1822.856 kb on + strandat 1822.857 kb on + strandat 1822.864 kb on + strandat 1822.864 kb on - strandat 1822.937 kb on + strand, within Dsui_1734at 1823.024 kb on + strand, within Dsui_1734at 1823.032 kb on - strand, within Dsui_1734at 1823.032 kb on - strand, within Dsui_1734at 1823.056 kb on + strand, within Dsui_1734at 1823.108 kb on + strand, within Dsui_1734at 1823.212 kb on + strand, within Dsui_1734at 1823.242 kb on + strand, within Dsui_1734at 1823.259 kb on + strand, within Dsui_1734at 1823.261 kb on + strand, within Dsui_1734at 1823.267 kb on - strand, within Dsui_1734at 1823.269 kb on - strandat 1823.318 kb on + strand, within Dsui_1734at 1823.336 kb on - strand, within Dsui_1734at 1823.348 kb on - strand, within Dsui_1734at 1823.353 kb on - strand, within Dsui_1734at 1823.356 kb on + strand, within Dsui_1734at 1823.364 kb on - strand, within Dsui_1734at 1823.429 kb on - strandat 1823.443 kb on + strandat 1823.516 kb on - strandat 1823.538 kb on + strandat 1823.549 kb on + strandat 1823.568 kb on + strandat 1823.568 kb on + strandat 1823.600 kb on + strandat 1823.600 kb on + strandat 1823.608 kb on - strandat 1823.608 kb on - strandat 1823.659 kb on + strand, within Dsui_1735at 1823.727 kb on + strand, within Dsui_1735at 1823.752 kb on + strand, within Dsui_1735at 1823.752 kb on + strand, within Dsui_1735at 1823.757 kb on + strand, within Dsui_1735at 1823.794 kb on + strand, within Dsui_1735at 1823.840 kb on - strand, within Dsui_1735at 1823.885 kb on + strand, within Dsui_1735at 1824.019 kb on - strand, within Dsui_1735at 1824.025 kb on - strand, within Dsui_1735at 1824.053 kb on + strand, within Dsui_1735at 1824.073 kb on + strand, within Dsui_1735at 1824.105 kb on + strand, within Dsui_1735at 1824.131 kb on - strand, within Dsui_1735at 1824.199 kb on + strand, within Dsui_1735at 1824.206 kb on + strand, within Dsui_1735at 1824.219 kb on - strand, within Dsui_1735at 1824.226 kb on - strand, within Dsui_1735at 1824.241 kb on + strand, within Dsui_1735at 1824.268 kb on + strand, within Dsui_1735at 1824.271 kb on - strand, within Dsui_1735at 1824.276 kb on - strand, within Dsui_1735at 1824.276 kb on - strand, within Dsui_1735at 1824.292 kb on + strand, within Dsui_1735at 1824.292 kb on + strand, within Dsui_1735at 1824.300 kb on - strand, within Dsui_1735at 1824.302 kb on + strand, within Dsui_1735at 1824.340 kb on - strand, within Dsui_1735at 1824.389 kb on - strand, within Dsui_1735at 1824.400 kb on - strand, within Dsui_1735at 1824.424 kb on - strand, within Dsui_1735at 1824.474 kb on - strand, within Dsui_1735at 1824.504 kb on + strand, within Dsui_1735at 1824.559 kb on + strand, within Dsui_1735at 1824.562 kb on - strand, within Dsui_1735at 1824.564 kb on + strand, within Dsui_1735at 1824.606 kb on - strand, within Dsui_1735at 1824.606 kb on - strand, within Dsui_1735at 1824.612 kb on - strand, within Dsui_1735at 1824.621 kb on + strand, within Dsui_1735at 1824.647 kb on + strand, within Dsui_1735at 1824.755 kb on + strandat 1824.765 kb on + strandat 1824.772 kb on + strandat 1824.772 kb on + strandat 1824.780 kb on - strandat 1824.793 kb on + strandat 1824.816 kb on - strandat 1824.821 kb on + strandat 1824.875 kb on - strandat 1824.910 kb on + strandat 1824.924 kb on + strandat 1824.934 kb on + strandat 1824.969 kb on + strandat 1824.969 kb on + strandat 1824.979 kb on + strandat 1824.979 kb on + strandat 1824.979 kb on + strandat 1824.984 kb on + strandat 1825.004 kb on + strand, within Dsui_1736at 1825.040 kb on - strandat 1825.059 kb on + strand, within Dsui_1736at 1825.067 kb on - strand, within Dsui_1736at 1825.076 kb on + strand, within Dsui_1736at 1825.076 kb on + strand, within Dsui_1736at 1825.133 kb on - strand, within Dsui_1736at 1825.142 kb on + strand, within Dsui_1736at 1825.190 kb on + strand, within Dsui_1736at 1825.223 kb on + strand, within Dsui_1736at 1825.231 kb on - strand, within Dsui_1736at 1825.351 kb on + strand, within Dsui_1736at 1825.358 kb on + strand, within Dsui_1736at 1825.358 kb on + strand, within Dsui_1736at 1825.358 kb on + strand, within Dsui_1736at 1825.358 kb on + strand, within Dsui_1736at 1825.358 kb on + strand, within Dsui_1736at 1825.358 kb on + strand, within Dsui_1736at 1825.358 kb on + strand, within Dsui_1736at 1825.358 kb on + strandat 1825.366 kb on - strand, within Dsui_1736at 1825.366 kb on - strandat 1825.436 kb on + strand, within Dsui_1736at 1825.511 kb on + strand, within Dsui_1736at 1825.511 kb on + strand, within Dsui_1736at 1825.519 kb on - strand, within Dsui_1736at 1825.617 kb on + strandat 1825.617 kb on + strandat 1825.625 kb on - strandat 1825.708 kb on + strandat 1825.748 kb on + strandat 1825.748 kb on + strandat 1825.801 kb on + strand, within Dsui_1737at 1825.801 kb on + strand, within Dsui_1737at 1825.801 kb on + strand, within Dsui_1737at 1825.848 kb on + strand, within Dsui_1737at 1825.856 kb on - strand, within Dsui_1737

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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1,822,557 + Dsui_1733 0.40 -0.2
1,822,602 + Dsui_1733 0.51 +2.3
1,822,610 - Dsui_1733 0.53 -1.6
1,822,620 - +0.8
1,822,657 + Dsui_1733 0.65 -1.2
1,822,677 + Dsui_1733 0.70 +0.8
1,822,677 + Dsui_1733 0.70 -0.2
1,822,686 + Dsui_1733 0.72 -1.8
1,822,694 - +0.8
1,822,735 - Dsui_1733 0.84 -0.8
1,822,787 - +0.8
1,822,856 + +0.8
1,822,857 + -0.2
1,822,864 + -2.9
1,822,864 - +0.8
1,822,937 + Dsui_1734 0.17 -0.2
1,823,024 + Dsui_1734 0.30 -1.6
1,823,032 - Dsui_1734 0.31 -0.2
1,823,032 - Dsui_1734 0.31 -1.6
1,823,056 + Dsui_1734 0.34 -0.2
1,823,108 + Dsui_1734 0.42 -1.6
1,823,212 + Dsui_1734 0.57 -0.2
1,823,242 + Dsui_1734 0.61 -0.8
1,823,259 + Dsui_1734 0.64 -0.2
1,823,261 + Dsui_1734 0.64 -1.6
1,823,267 - Dsui_1734 0.65 -1.2
1,823,269 - -0.2
1,823,318 + Dsui_1734 0.72 -1.2
1,823,336 - Dsui_1734 0.75 -0.2
1,823,348 - Dsui_1734 0.77 +0.8
1,823,353 - Dsui_1734 0.78 -0.8
1,823,356 + Dsui_1734 0.78 +0.8
1,823,364 - Dsui_1734 0.79 -0.8
1,823,429 - +0.8
1,823,443 + +0.8
1,823,516 - -0.2
1,823,538 + -1.6
1,823,549 + -1.2
1,823,568 + -0.3
1,823,568 + -0.2
1,823,600 + -1.2
1,823,600 + +0.5
1,823,608 - +0.8
1,823,608 - +0.8
1,823,659 + Dsui_1735 0.10 -1.6
1,823,727 + Dsui_1735 0.15 -0.2
1,823,752 + Dsui_1735 0.17 -0.8
1,823,752 + Dsui_1735 0.17 +0.8
1,823,757 + Dsui_1735 0.17 -0.8
1,823,794 + Dsui_1735 0.20 -0.8
1,823,840 - Dsui_1735 0.23 -1.8
1,823,885 + Dsui_1735 0.27 -0.8
1,824,019 - Dsui_1735 0.37 -1.8
1,824,025 - Dsui_1735 0.37 +0.8
1,824,053 + Dsui_1735 0.39 +0.8
1,824,073 + Dsui_1735 0.41 -4.2
1,824,105 + Dsui_1735 0.43 -1.6
1,824,131 - Dsui_1735 0.45 +0.8
1,824,199 + Dsui_1735 0.50 -0.2
1,824,206 + Dsui_1735 0.50 -1.6
1,824,219 - Dsui_1735 0.51 -0.8
1,824,226 - Dsui_1735 0.52 -1.2
1,824,241 + Dsui_1735 0.53 -0.2
1,824,268 + Dsui_1735 0.55 +0.8
1,824,271 - Dsui_1735 0.55 +0.8
1,824,276 - Dsui_1735 0.56 +0.8
1,824,276 - Dsui_1735 0.56 -1.2
1,824,292 + Dsui_1735 0.57 -1.2
1,824,292 + Dsui_1735 0.57 -2.1
1,824,300 - Dsui_1735 0.57 -1.6
1,824,302 + Dsui_1735 0.57 -0.2
1,824,340 - Dsui_1735 0.60 +0.8
1,824,389 - Dsui_1735 0.64 -0.2
1,824,400 - Dsui_1735 0.65 +0.8
1,824,424 - Dsui_1735 0.66 +0.8
1,824,474 - Dsui_1735 0.70 -0.8
1,824,504 + Dsui_1735 0.72 -2.1
1,824,559 + Dsui_1735 0.76 +0.8
1,824,562 - Dsui_1735 0.77 +0.8
1,824,564 + Dsui_1735 0.77 -1.6
1,824,606 - Dsui_1735 0.80 -0.2
1,824,606 - Dsui_1735 0.80 +0.8
1,824,612 - Dsui_1735 0.80 -0.8
1,824,621 + Dsui_1735 0.81 -0.8
1,824,647 + Dsui_1735 0.83 +0.8
1,824,755 + -1.8
1,824,765 + -2.6
1,824,772 + +0.8
1,824,772 + -0.8
1,824,780 - +0.8
1,824,793 + -0.8
1,824,816 - +0.0
1,824,821 + -0.2
1,824,875 - -0.2
1,824,910 + +0.8
1,824,924 + -1.8
1,824,934 + +0.8
1,824,969 + -0.8
1,824,969 + +0.8
1,824,979 + +0.8
1,824,979 + +0.8
1,824,979 + +0.8
1,824,984 + -1.6
1,825,004 + Dsui_1736 0.12 +0.8
1,825,040 - +0.8
1,825,059 + Dsui_1736 0.20 +2.3
1,825,067 - Dsui_1736 0.21 +0.8
1,825,076 + Dsui_1736 0.22 +0.3
1,825,076 + Dsui_1736 0.22 +0.8
1,825,133 - Dsui_1736 0.30 -0.2
1,825,142 + Dsui_1736 0.31 +1.8
1,825,190 + Dsui_1736 0.37 -0.2
1,825,223 + Dsui_1736 0.42 -1.4
1,825,231 - Dsui_1736 0.43 +0.8
1,825,351 + Dsui_1736 0.59 -2.0
1,825,358 + Dsui_1736 0.60 -2.0
1,825,358 + Dsui_1736 0.60 -0.2
1,825,358 + Dsui_1736 0.60 -1.5
1,825,358 + Dsui_1736 0.60 +0.3
1,825,358 + Dsui_1736 0.60 -2.9
1,825,358 + Dsui_1736 0.60 +0.8
1,825,358 + Dsui_1736 0.60 -0.2
1,825,358 + +0.8
1,825,366 - Dsui_1736 0.61 +0.8
1,825,366 - +0.8
1,825,436 + Dsui_1736 0.70 +0.8
1,825,511 + Dsui_1736 0.80 -1.6
1,825,511 + Dsui_1736 0.80 -1.8
1,825,519 - Dsui_1736 0.81 +0.8
1,825,617 + -0.8
1,825,617 + -1.2
1,825,625 - +0.8
1,825,708 + +0.8
1,825,748 + +0.0
1,825,748 + -0.2
1,825,801 + Dsui_1737 0.15 -1.8
1,825,801 + Dsui_1737 0.15 -1.8
1,825,801 + Dsui_1737 0.15 -0.8
1,825,848 + Dsui_1737 0.21 -2.6
1,825,856 - Dsui_1737 0.22 +0.8

Or see this region's nucleotide sequence